Outline of our pipeline that processes GenBank sequence data for phylogenetic analysis. Steps that are executed by newly developed scripts are highlighted in blue, and external programs are written in parentheses after step description. Steps that directly refer to the phylogenetic analysis are highlighted in red. The additional procedure to infer subset 2 is shaded in gray.
Peters et al. BMC Biology 2011 9:55 doi:10.1186/1741-7007-9-55