Table 1

Examples of ORF overlap with core group I intron sequences

Organism

Host gene interrupted

Endonuclease family

Insertion site within intron

Overlap with intron (nucleotides)

Structural element overlap


Bacillus thuringiensis sup. pakistani [90]

nrdF

GIY-YIG

P6a

56

P6a/P7/P7.1/7.1a

Bacillus phage SPO1 [91]

DNA polymerase

HNH

P8

9

P8

Synechococcus lividus [92]

rDNA LSU

LAGLIDADG

P8

81

P6/P7/P3/P8/P9.0/P9

Synechocystis PCC 6803 [93]

tRNAfmet

PD-(D/E)-XK

P1

61

P1/P2

Physarum polycephalum [94]

rDNA LSU (nucleus)

His-Cys box

P1

0

None


Edgell et al. BMC Biology 2011 9:22   doi:10.1186/1741-7007-9-22

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