Table 1

Estimated coalescence ages of mtDNA haplogroup M9a'b and its sub-haplogroups based on different calibration rates.

Entire mitochondrial genome

Only synonymous mutations

Transitions in 16090 to 16365


Node/Clade

Na

ρ

σ

Tb (ky)

ΔTb (ky)

ρ

σ

Tc (ky)

ΔTc (ky)

Na

ρ

σ

Td (ky)

ΔTd (ky)


M9a'b

120

10.83

2.01

28.0

5.2

3.28

1.14

26.2

9.1

M9a

118

8.86

1.48

22.9

3.8

2.23

0.59

17.8

4.7

M9a* (w/o M9a1)

15

7.40

1.11

19.1

2.9

2.73

0.52

21.8

4.2

50

1.20

0.46

22.6

8.7

M9a5

5

4.40

1.26

11.4

3.3

1.40

0.53

11.2

4.2

M9a4

7

5.57

1.32

14.4

3.4

1.71

0.49

13.7

4.0

M9a1

103

8.07

1.36

20.9

3.5

2.16

0.67

17.2

5.3

M9a1b

35

5.03

1.35

13.0

3.5

1.37

0.37

11.0

3.0

M9a1b* (w/o M9a1b1)

8

3.13

1.04

8.1

2.7

0.88

0.38

7.0

3.0

41

0.51

0.16

9.7

3.0

M9a1b1

27

3.59

0.68

9.3

1.8

1.52

0.47

12.1

3.8

274

0.55

0.23

10.5

4.3

M9a1a

67

7.19

1.43

18.6

3.7

2.60

1.01

20.8

8.1

M9a1a2

8

3.13

1.17

8.1

3.0

0.63

0.33

5.0

2.6

65e

0.60

0.19

11.3

3.5

M9a1a1

56

6.59

1.37

17.0

3.5

1.77

0.66

14.1

5.3

M9a1a1* (w/o M9a1a1c)

21

4.00

1.01

10.3

2.6

1.43

0.32

11.4

2.6

48

0.77

0.30

14.5

5.7

M9a1a1c

35

6.14

1.55

15.9

4.0

0.97

0.28

7.8

2.2

M9a1a1c1

34

5.21

1.25

13.5

3.2

0.94

0.28

7.5

2.3

M9a1a1c1* (w/o M9a1a1c1b)

9

3.33

1.03

8.6

2.7

1.67

0.94

13.3

7.5

67

0.39

0.14

7.3

2.6

M9a1a1c1b

25

3.88

1.32

10.0

3.4

0.68

0.18

5.4

1.5

M9a1a1c1b (@16291)

24

2.88

0.94

7.4

2.4

0.58

0.18

4.7

1.4

170

0.32

0.08

6.1

1.5

M9a1a1c1b (@16291-711)

21

1.90

0.35

4.9

0.9

0.48

0.16

3.8

1.3


a Number of mtDNA sequences.

b Using the corrected molecular clock proposed by Soares et al. [60].

c According to the recalibrated synonymous rate of Loogväli et al. [61]. The rate of Soares et al. [60] (7,884 years/synonymous substitution) was similar to Loogväli et al. [61] (7990 years/synonymous substantiation), and age estimates based on this rate were not listed in the Table.

d Using the corrected molecular clock proposed by Soares et al. [60].

e The numbers of mtDNAs refer the sequences allocated into M9a1a2 with additional back-mutation 16362.

Peng et al. BMC Biology 2011 9:2   doi:10.1186/1741-7007-9-2

Open Data