Table 1 |
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|
Phylogenetic relationships of the Ascomycete fungi |
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|
Class |
Species |
P value of increased HI orthologue retention |
|
|
||
|
Saccharomycetes: |
||
|
|
||
|
Post-WGD yeasts |
Saccharomyces cerevisiae |
- |
|
|
||
|
Saccharomyces paradoxus |
0.002 |
|
|
|
||
|
Saccharomyces bayanus |
0.001 |
|
|
|
||
|
Kluyveromyces polysporus |
0.01 |
|
|
|
||
|
Saccharomyces castellii |
0.009 |
|
|
|
||
|
Pre-WGD yeasts |
Saccharomyces kluyveri |
0.04 |
|
|
||
|
Kluyveromyces waltii |
0.004 |
|
|
|
||
|
Ashbya gossypii |
0.003 |
|
|
|
||
|
Kluyveromyces lactis |
0.001 |
|
|
|
||
|
Candida albicans |
0.01 |
|
|
|
||
|
Candida tropicalis |
0.001 |
|
|
|
||
|
Candida parapsilosis |
0.0004 |
|
|
|
||
|
Lodderomyces elongisporus |
0.0006 |
|
|
|
||
|
Candida lusitaniae |
0.001 |
|
|
|
||
|
Debaryomyces hansenii |
0.006 |
|
|
|
||
|
Candida guilliermondii |
0.001 |
|
|
|
||
|
Yarrowia lipolytica |
0.02 |
|
|
|
||
|
Eurotiomycetes |
Aspergillus nidulans |
0.0009 |
|
|
||
|
Sordariomycetes |
Neurospora crassa |
0.0005 |
|
|
||
|
Magnaporthe grisea |
0.03 |
|
|
|
||
|
Schizosaccharomycetes |
Schizosaccharomyces pombe |
0.01 |
|
|
||
|
Schizosaccharomyces japonicus |
0.001 |
|
|
|
||
|
The P value for Saccharomyces cerevisiae haploinsufficient (HI) genes having a greater likelihood of having an orthologue, relative to the genome average, is shown for each species. Ribosomal protein genes were excluded from the analysis (see main text). WGD = whole-genome duplication. |
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|
de Clare et al. BMC Biology 2011 9:15 doi:10.1186/1741-7007-9-15 |
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