Table 1

Ranking of the top 15 very long intergenic non-coding (vlincs) in the K562 cell line in other tissues [Ewing Family of Tumours (EFT) and normal) and among University of California Santa Cruz (UCSC) genes

ID

Chromosome

start

Stop

Relative mass (%)

K562 rank

Average rank EFT tumours

Minimum rank EFT tumours

Average rank liver and brain

Minimum rank liver and brain

Rank among UCSC genes


Vlinc_470

chr7

119013253

119337443

0.172

1

412

199

367

278

9


Vlinc_352

chr4

127557220

128001463

0.160

2

344

265

201

148

11


Vlinc_479

chr7

145112991

145362753

0.158

3

18

6

1

1

12


Vlinc_518

chr8

130323251

130656488

0.157

4

342

229

238

104

13


Vlinc_500

chr8

91302893

91655164

0.131

5

382

353

205

189

18


Vlinc_568

chrX

120153582

120594672

0.078

6

281

241

129

63

40


Vlinc_94

chr12

90597529

90798365

0.070

7

492

461

375

331

48


Vlinc_453

chr7

10409634

10632037

0.064

8

325

200

275

194

62


Vlinc_454

chr7

10638258

10786122

0.060

9

488

463

466

460

74


Vlinc_203

chr18

73753244

73834670

0.055

10

566

547

558

543

80


Vlinc_180

chr16

83939419

84202366

0.052

11

93

55

18

8

86


Vlinc_157

chr16

7897639

8105614

0.052

12

476

432

323

244

87


Vlinc_77

chr12

23219253

23449659

0.050

13

504

448

354

298

93


Vlinc_377

chr5

53642299

53764051

0.048

14

477

363

449

440

97


Vlinc_93

chr12

90280166

90554683

0.048

15

454

410

205

94

100


Kapranov et al. BMC Biology 2010 8:149   doi:10.1186/1741-7007-8-149

Open Data