Table 3

Codon-based Z-test for selection results for exon sequences.

exon

P value

HA:

dN > dS

P value

HA:

dN < dS

test statistic

exon

P value

HA:

dN > dS

P value

HA:

dN < dS

test statistic


accD

1

0.2013

0.8400

psbK

0.3925

1

0.2735

atpA

1

0.0146

2.2071

psbL

0.0922

1

1.3350

atpB

1

0.0007

3.2809

psbM

0.0125

1

2.2697

atpE

0.0632

1

1.5390

psbN

1

0.1632

0.9854

atpF

0.0888

1

1.3559

psbT

1

0.1193

1.1842

atpH

1

0.0210

2.0561

psbZ

1

0.0783

1.4253

atpI

1

0.0622

1.5477

rbcL

1

0.0000

4.5278

ccsA

1

0.1785

0.9248

rpl2

1

0.0031

2.7867

cemA

1

0.2453

0.6915

rpl14

1

0.0234

2.0097

chlB

1

0.0002

3.6305

rpl16

1

0.0463

1.6957

chlL

1

0.0039

2.7022

rpl20

1

0.0359

1.8161

chlN

1

0.0000

5.9654

rpl22

1

0.0057

2.5720

clpP

0.4634

1

0.0920

rpl23

1

0.2150

0.7919

infA

1

0.1554

1.0177

rpl32

1

0.1692

0.9613

matK

1

0.1628

0.9871

rpl33

1

0.0695

1.4893

petA

1

0.0140

2.2233

rpl36

1

0.1550

1.0194

petB

1

0.0022

2.9021

rpoA

1

0.0691

1.4928

petD

1

0.1025

1.2742

rpoB

1

0.0000

4.2298

petG

1

0.0697

1.4881

rpoC1

1

0.0103

2.3448

petL

0.0791

1

1.4197

rpoC2

1

0.0017

2.9858

petN

1

0.1594

0.9990

rps2

1

0.0583

1.5804

psaA

1

0.0000

5.5339

rps3

1

0.0019

2.9447

psaB

1

0.0000

5.3084

rps4

1

0.0062

2.5373

psaC

1

0.1711

0.9537

rps7

0.0130

1

2.2541

psaI

0.0482

1

1.6756

rps8

1

0.3590

0.3619

psaJ

1

0.4104

0.2270

rps11

1

0.0638

1.5339

psaM

0.4967

1

0.0084

rps12

1

0.1016

1.2795

psbA

1

0.0004

3.4212

rps14

1

0.0984

1.2977

psbB

1

0.0003

3.5747

rps15

1

0.0070

2.4949

psbC

1

0.0002

3.6848

rps18

1

0.1515

1.0343

psbD

1

0.0045

2.6582

rps19

1

0.0863

1.3722

psbE

1

0.0642

1.5310

ycf1

0.0000

1

4.0848

psbF

0.0587

1

1.5769

ycf2

0.0156

1

2.1793

psbH

0.0124

1

2.2732

ycf3

1

0.0813

1.4051

psbI

1

0.1810

0.9151

ycf4

1

0.0531

1.6274

psbJ

0.0916

1

1.3389


Results shown are overall average of all ingroup pairwise comparisons, with significance at P ≤ 0.05 indicated in bold.

Parks et al. BMC Biology 2009 7:84   doi:10.1186/1741-7007-7-84

Open Data