Table 2

Summary of variable and parsimony informative sites in data partitions.

Treatment

Aligned length

    Pines only

Variable positions

(% of total)

PI positions

(% of total)

    Pines and outgroups

Variable positions

(% of total)

PI positions

(% of total)


All Nucleotides

132085

11179 (8.5)

7761 (5.9)

22834 (17.3)

11534 (8.7)

All Nucleotides without ycf1, ycf2

118935

8755 (7.4)

5852 (4.9)

18978 (16.0)

9038 (7.6)

Exon Nucleotides

62298

4716 (7.6)

3475 (5.6)

8346 (13.4)

4867 (7.8)

Exon Nucleotides without ycf1, ycf2

49044

2291 (4.7)

1566 (3.2)

4489 (9.2)

2381 (4.9)

ycf1

6355

1514 (23.8)

1227 (19.3)

2165 (34.1)

1507 (23.7)

ycf2

6794

910 (13.4)

682 (10.0)

1686 (24.8)

987 (14.5)

ycf1+ycf2

13149

2424 (18.4)

1909 (14.5)

3851 (29.3)

2494 (19.0)

Wang et al. [22]

3513

196 (5.6)

127 (3.6)

482 (13.5)

243 (6.8)

Gernandt et al. [21]

2817

197 (7.0)

128 (4.5)

345 (12.2)

167 (5.9)

Eckert and Hall [20]

3288

217 (6.6)

123 (3.7)

411 (12.5)

206 (6.3)


Data from Gernandt et al. [21] and Eckert and Hall [20] pruned to include only ingroup species and outgroup genera common to our study. (PI = parsimony informative.)

Parks et al. BMC Biology 2009 7:84   doi:10.1186/1741-7007-7-84

Open Data