Table 1 |
|||||
|
Sequences used for the phylogenetic analysis of cyanobacteria |
|||||
|
Code |
Old |
New |
Spot |
Database code |
Species |
|
|
|||||
|
Am1 B0127 |
BtuB |
BtuB |
26 |
gi|158339996 |
Acaryochloris marina MBIC11017 |
|
|
|||||
|
Am1 3407 |
CirA |
HutA |
3 |
gi|158336543 |
|
|
|
|||||
|
Am1 3358 |
CirA |
IutA |
38 |
gi|158336494 |
|
|
|
|||||
|
Am1 A0170 |
CirA |
ViuA |
50 |
gi|158339820 |
|
|
|
|||||
|
Am1 3383 |
CirA |
ViuA |
49 |
gi|158336519 |
|
|
|
|||||
|
Am1 A0184 |
Fiu |
FhuA |
58 |
gi|158339834 |
|
|
|
|||||
|
Am1 A0274 |
FhuE |
FhuA |
57 |
gi|158339535 |
|
|
|
|||||
|
Am1 A0198 |
- |
FhuA |
71 |
gi|158339845 |
|
|
|
|||||
|
Am1 A0157 |
FhuE |
FhuA |
59 |
gi|158339807 |
|
|
|
|||||
|
Am1 3393 |
FhuE |
FhuA |
72 |
gi|158336529 |
|
|
|
|||||
|
Am1 3398 |
- |
FhuA |
65 |
gi|158336534 |
|
|
|
|||||
|
Am1 3403 |
Fiu |
FhuA |
62 |
gi|158336539 |
|
|
|
|||||
|
Ava_B0148 |
FhuE |
FhuA |
89 |
gi|75812430 |
Anabaena variabilis ATCC 29413 |
|
|
|||||
|
Ava_B0150 |
CirA |
FhuA |
88 |
gi|75812432 |
|
|
|
|||||
|
Ava_B0159 |
BtuB |
FhuA |
82 |
gi|75812441 |
|
|
|
|||||
|
Ava_B0185 |
CirA |
ViuA |
46 |
gi|75812467 |
|
|
|
|||||
|
Ava_B0217 |
Fiu |
BtuB |
23 |
gi|75812499 |
|
|
|
|||||
|
Ava_B0218 |
CirA |
IutA |
42 |
gi|75812500 |
|
|
|
|||||
|
Ava_C0010 |
FhuE |
BtuB |
27 |
gi|75812671 |
|
|
|
|||||
|
Ava_1672 |
CirA |
ViuA |
47 |
gi|75907894 |
|
|
|
|||||
|
Ava_2840 |
CirA |
FhuA |
83 |
gi|75909052 |
|
|
|
|||||
|
Ava_4967 |
BtuB |
FhuA |
84 |
gi|75911163 |
|
|
|
|||||
|
cce3039 |
CirA |
FhuA |
54 |
gi|172037952 |
Cyanothece sp. CCY0110 |
|
|
|||||
|
glr0280 |
CirA |
? |
7 |
gi|37519849 |
Gloeobacter violaceus PCC7421 |
|
|
|||||
|
gll0302 |
CirA |
IutA |
41 |
gi|37519871 |
|
|
|
|||||
|
gll0311 |
- |
FhuA |
81 |
gi|37519880 |
|
|
|
|||||
|
gll0313 |
- |
FhuA |
56 |
gi|37519882 |
|
|
|
|||||
|
gll0319 |
- |
FhuA |
63 |
gi|37519888 |
|
|
|
|||||
|
glr0327 |
CirA |
ViuA |
48 |
gi|37519896 |
|
|
|
|||||
|
gll0331 |
FecA |
FhuA |
69 |
gi|37519900 |
|
|
|
|||||
|
gll0343 |
CirA |
IutA |
36 |
gi|37519912 |
|
|
|
|||||
|
glr0349 |
FhuE |
FhuA |
95 |
gi|37519918 |
|
|
|
|||||
|
glr0353 |
- |
FhuA |
76 |
gi|37519922 |
|
|
|
|||||
|
gll0361 |
FhuE |
FhuA |
78 |
gi|37519930 |
|
|
|
|||||
|
gll0896 |
FepA |
BtuB |
22 |
gi|37520465 |
|
|
|
|||||
|
gll1276 |
OMC |
BtuB |
20 |
gi|37520845 |
|
|
|
|||||
|
glr1304 |
OMC |
BtuB |
17 |
gi|37520873 |
|
|
|
|||||
|
glr1380 |
- |
- |
- |
gi|37520949 |
|
|
|
|||||
|
glr1385 |
- |
BtuB |
18 |
gi|37520954 |
|
|
|
|||||
|
glr1386 |
CirA |
BtuB |
15 |
gi|37520955 |
|
|
|
|||||
|
gll1452 |
BtuB |
BtuB |
25 |
gi|37521021 |
|
|
|
|||||
|
glr1488 |
- |
BtuB |
12 |
gi|37521057 |
|
|
|
|||||
|
glr1610 |
- |
? |
8 |
gi|37521179 |
|
|
|
|||||
|
glr1909 |
FhuE |
FhuA |
73 |
gi|37521478 |
|
|
|
|||||
|
gll1962 |
- |
BtuB |
16 |
gi|37521531 |
|
|
|
|||||
|
glr1973 |
BtuB |
BtuB |
29 |
gi|37521542 |
|
|
|
|||||
|
gll1978 |
Fiu |
FhuA |
93 |
gi|37521547 |
|
|
|
|||||
|
glr2051 |
FepA |
? |
10 |
gi|37521620 |
|
|
|
|||||
|
glr2116 |
BtuB |
BtuB |
24 |
gi|37521685 |
|
|
|
|||||
|
gll3103 |
BtuB |
BtuB |
11 |
gi|37522672 |
|
|
|
|||||
|
glr3352 |
OMCa |
BtuB |
19 |
gi|37522921 |
|
|
|
|||||
|
gll3601 |
BtuB |
BtuB |
14 |
gi|37523170 |
|
|
|
|||||
|
gll3680 |
BtuB |
? |
9 |
gi|37523249 |
|
|
|
|||||
|
gll3974 |
FhuE |
FhuA |
77 |
gi|37523543 |
|
|
|
|||||
|
gll3976 |
CirA |
FhuA |
75 |
gi|37523545 |
|
|
|
|||||
|
glr4296 |
CirA |
BtuB |
13 |
gi|37523865 |
|
|
|
|||||
|
NpunF1172 |
- |
BtuB |
33 |
gi|186681644 |
Nostoc punctiforme PCC73102 |
|
|
|||||
|
NpunF3454 |
- |
FhuA |
94 |
gi|186683610 |
|
|
|
|||||
|
all1101 |
- |
FhuA |
52 |
gi|17228596 |
Anabaena sp. PCC 7120 |
|
|
|||||
|
all2148 |
FhuE |
FhuA |
66 |
gi|17229640 |
|
|
|
|||||
|
all2158 |
FhuE |
FhuA |
53 |
gi|17229650 |
|
|
|
|||||
|
all2236 |
Fiu |
FhuA |
87 |
gi|17229728 |
|
|
|
|||||
|
all2610 |
CirA |
FhuA |
67 |
gi|17230102 |
|
|
|
|||||
|
all2674 |
Fiu |
FhuA |
70 |
gi|17230166 |
|
|
|
|||||
|
all3310 |
BtuB |
BtuB |
21 |
gi|17230802 |
|
|
|
|||||
|
all4026 |
CirA |
ViuA |
45 |
gi|17231518 |
|
|
|
|||||
|
all4924 |
FhuE |
FhuA |
61 |
gi|17232416 |
|
|
|
|||||
|
alr0397 |
CirA |
IutA |
40 |
gi|17227893 |
|
|
|
|||||
|
alr2153 |
CirA |
HutA |
4 |
gi|17229645 |
|
|
|
|||||
|
alr2175 |
- |
FhuA |
69 |
gi|17229667 |
|
|
|
|||||
|
alr2185 |
Fiu |
FhuA |
51 |
gi|17229677 |
|
|
|
|||||
|
alr2209 |
CirA |
IutA |
44 |
gi|17229701 |
|
|
|
|||||
|
alr2211 |
CirA |
FhuA |
90 |
gi|17229703 |
|
|
|
|||||
|
alr2581 |
CirA |
IutA |
43 |
gi|17230073 |
|
|
|
|||||
|
alr2588 |
CirA |
FhuA |
74 |
gi|17230080 |
|
|
|
|||||
|
alr2592 |
FhuE |
FhuA |
91 |
gi|17230084 |
|
|
|
|||||
|
alr2596 |
FhuE |
FhuA |
64 |
gi|17230088 |
|
|
|
|||||
|
alr2626 |
- |
FhuA |
79 |
gi|17230118 |
|
|
|
|||||
|
alr3242 |
CirA |
HutA |
5 |
gi|17230734 |
|
|
|
|||||
|
alr4028 +alr4029 |
- |
BtuB |
32 |
gi|17231520 gi|17231521 |
|
|
|
|||||
|
sll1206 |
IutA |
IutA |
39 |
gi|16329186 |
Synechocystis sp. PCC6803 |
|
|
|||||
|
sll1409 |
FhuA |
FhuA |
80 |
gi|16329191 |
|
|
|
|||||
|
sll1406 |
FhuA |
FhuA |
85 |
gi|16329194 |
|
|
|
|||||
|
slr1490 |
FhuA |
FhuA |
68 |
gi|16329201 |
|
|
|
|||||
|
CYA_1108 |
BtuB |
BtuB |
31 |
gi|86605797 |
Synechococcus sp. JA-3-3Ab |
|
|
|||||
|
CYA_2031 |
CirA |
HutA |
1 |
gi|86606671 |
|
|
|
|||||
|
CYB_1330 |
BtuB |
BtuB |
28 |
gi|86608804 |
Synechococcus sp. JA-2-3B'a(2-13) |
|
|
|||||
|
CYB_2727 |
CirA |
HutA |
2 |
gi|86610153 |
|
|
|
|||||
|
SynpA0637 |
BtuB |
BtuB |
30 |
gi|170077260 |
Synechococcus sp. PCC 7002 |
|
|
|||||
|
SynpG0081 |
CirA |
HutA |
6 |
gi|170076551 |
|
|
|
|||||
|
SynpG0006 |
CirA |
IutA |
35 |
gi|170076476 |
|
|
|
|||||
|
SynpG0138 |
CirA |
IutA |
37 |
gi|170076608 |
|
|
|
|||||
|
SynPG0089 |
FhuE |
FhuA |
55 |
gi|170076568 |
|
|
|
|||||
|
SynpG0103 |
FhuA |
FhuA |
86 |
gi|170076573 |
|
|
|
|||||
|
Nspu20875 |
CirA |
FhuA |
92 |
gi|119508873 |
Nodularia spumigena CCY9414 |
|
|
|||||
|
Nspu21611 |
CirA |
IutA |
43 |
gi|119509643 |
|
|
|
|||||
|
Cwat6206* |
- |
FhuA |
1 |
gi|67920343 |
Crocosphaera watsonii WH8501 |
|
|
|||||
|
The annotation of the sequences is indicated in column 1, the spot number according to Figure 3 is indicated in column 4; the initial annotation in the database is given in column 2; the classification according to Figure 3 using the name of a representative transporter of the related category is given in column 3; the accession code in column 5; and the source organism column 6. a(OMC, outer membrane channel; '*', incomplete sequence; '?', no clear assignment possible). |
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|
Mirus et al. BMC Biology 2009 7:68 doi:10.1186/1741-7007-7-68 |
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