Table 5

Significantly changed retrovirus-like genes

Contig

Best hit

Gene Name

NR5

DL5

NR14

DL14

C


10177_Contig1

XP_001201693

rev. transcriptase-like

10

2

0

0

0

10435_Contig1

ABB52637

envelope polyprotein

19

7

0

2

0

10953_Contig8

NP_055405

end. retroviral w

5

15

0

1

0

109875_Contig1

AAD19348

rev. transcriptase-like

0

0

10

0

0

110157_Contig5

NP_079357

hyp. prot. LOC57523

7

20

42

6

0

126954_Contig17

AAM34208

polyprotein

12

22

32

6

8

12813_Contig1

NP_003409

zinc finger protein 9

14

37

67

20

37

154450_Contig16

XP_945963

retrotransposon-like 1

5

27

11

2

10

174946_Contig1

BAC82626

pol-like protein

0

0

11

0

0

185474_Contig140

XP_790598

Helitron transposon

81

276

314

106

59

195627_Contig1

XP_692835

gypsy 1 polyprot.

0

0

11

0

0

218328_Contig1

XP_945963

retrotransposon-like 1

0

0

13

0

0

2194_Contig1

XP_001345076

pol polyprotein

17

0

0

0

0

23276_Contig1

NP_006798

chromobox hom. 1

14

0

0

0

0

23893_Contig1

ZP_01758189

NBB2750 hyp. protein

12

0

0

0

0

32735_Contig1

XP_001201693

rev. transcriptase-like

12

0

0

0

0

331680_Contig1

XP_001336840

lambda-recomb.-like

2

12

30

11

6

352970_Contig1

AAD02928

rev. transcriptase

0

0

0

0

12

39722_Contig1

XP_687309

rev. transcriptase

98

117

138

51

92

42238_Contig456

NP_055883

paternally exp. 10

41

2

10

3

12

42238_Contig60

NP_055883

paternally exp. 10

7

35

37

10

27

89909_Contig1

BAD72127

rev. transcriptase

0

12

0

0

0

94735_Contig1

XP_001336840

lambda-recomb.-like

0

12

0

0

0


Genes identified as differentially expressed by 454 sequencing analysis that have high sequence similarity to retrovirus genes.

Monaghan et al. BMC Biology 2009 7:1   doi:10.1186/1741-7007-7-1

Open Data