Table 3

Gene ontology breakdown of the 9411 salamander genes with presumptive human orthologs

Ontology

Level

Old annotations

New annotations


cell cycle

BP3

226

438

metabolism

BP2

1889

3982

cell motility

BP3

62

126

mophogenesis

BP2

109

272

development

BP1

342

795

response to stress

BP2

219

469

cell death

BP3

142

312

catalytic activity

MF1

1275

2855

transcription factor activity

MF2

112

344

kinase activity

MF4

159

456


Total (3935)

Total (9411)


The table shows the number of Ambystoma ESTdb contigs with gene ontology annotations before and after 454 DNA sequencing. The total is less than the sum of each category because several genes may belong to multiple categories. BP = biological process. MF = molecular function.

Monaghan et al. BMC Biology 2009 7:1   doi:10.1186/1741-7007-7-1

Open Data