Table 1 |
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Interspecies comparison of LALBA TATA box sequences |
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Species |
TATA box * |
Efficiency† |
Accession |
|
|
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|
Cape fur seal ‡ |
-58 AAGAAAA |
1.2–1.5% |
|
|
Sea lion ‡ |
-58 AAGAAAA |
1.2 – 1.5% |
|
|
Antarctic fur seal‡ |
-58 AAGAAAA |
1.2 – 1.5% |
|
|
Grey seal§ |
-59 AATAAAA |
60 – 75% |
|
|
Harbour seal§ |
-59 AATAAAA |
60 – 75% |
|
|
Ringed seal§ |
-59 AATAAAA |
60 – 75% |
|
|
Canine |
-59 AATAAAA |
60 – 75% |
|
|
Human |
-56 TATAAAA |
100 – 172% |
|
|
Bovine |
-59 AATAAAA |
60 – 75% |
|
|
Sheep |
-59 AATAAAA |
60 – 75% |
|
|
Camel |
-53 AATAAAA |
60 – 75% |
|
|
Guinea pig |
-59 AATAAAA |
60 – 75% |
|
|
Goat |
-59 AATAAAA |
60 – 75% |
|
|
Pig |
-60 AATAAAA |
60 – 75% |
|
|
Rabbit |
-59 AATAAAA |
60 – 75% |
|
|
Water Buffalo |
-59 AATAAAA |
60 – 75% |
|
|
Domestic Yak |
-59 AATAAAA |
60 – 75% |
|
|
Mouse |
-57 CATAAAA |
60 – 75% |
|
|
Rat |
-56 AATAAAA |
60 – 75% |
|
|
|
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* numbers represent base pairs relative to start of translation † prediction based on studies by Wobbe and Struhl [12] and expressed as a percentage of the consensus TATAAAG ‡ Otariid seal § Phocid seal |
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Sharp et al. BMC Biology 2008 6:48 doi:10.1186/1741-7007-6-48 |
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