Table 3

Transcription factor (TF)-binding sites overlapping with RNA structures

Binding site

CBF1

DIG1

MBP1

MCM1

REB1

SWI6


Total number of instances in genome

123

134

138

64

176

133

Number of instances covered by RNAz hits

22

17

32

28

10

35


Comparison of number of TF-binding sites of the six transcription factors CBF1 (cell cycle, stress response), DIG1 (Down-regulator of Invasive Growth), MBP1 (cell cycle), MCM1 (stress response), REB1 (cell cycle), SWI6 (cell cycle) overlapping with a predicted RNA structure with total number of TF-binding sites of these transcription factors. TF-binding site data were taken from [18].

Steigele et al. BMC Biology 2007 5:25   doi:10.1186/1741-7007-5-25

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