Table 3 |
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|
Green algal and land plant chloroplast genomes examined in this study |
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|
Green alga/land plant |
Size (bp) |
IR size (bp) |
Genes (no.) a |
Introns (no.) b |
GenBank accession no. |
|
|
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|
Charophyceae |
|||||
|
Chara vulgaris |
184,933 |
10,919 |
127 |
2/16 |
GenBank:NC_008097 |
|
Chaetosphaeridium globosum |
131,183 |
12,431 |
125 |
1/17 |
GenBank:NC_004115 |
|
Chlorokybus atmophyticus |
152,254 |
7,640 |
138 |
1/0 |
GenBank:DQ422812 |
|
Mesostigma viride |
118,360 |
6,057 |
137 |
0 |
GenBank:NC_002186 |
|
Staurastrum punctulatum |
157,089 |
- |
121 |
1/7 |
GenBank:NC_008116 |
|
Zygnema circumcarinatum |
165,372 |
- |
125 |
1/12 |
GenBank:NC_008117 |
|
Land Plants |
|||||
|
Acorus calamus |
153,821 |
25,697 |
110 |
1/20 |
GenBank:NC_007407 |
|
Amborella trichopoda |
162,686 |
26,651 |
111 |
1/20 |
GenBank:NC_005086 |
|
Anthoceros formosae |
161,162 |
15,744 |
120 |
2/20 |
GenBank:NC_004543 |
|
Arabidopsis thaliana |
154,478 |
26,264 |
110 |
1/20 |
GenBank:NC_000932 |
|
Atropa belladonna |
156,687 |
17,031 |
111 |
1/20 |
GenBank:NC_004561 |
|
Calycanthus floridus |
153,337 |
23,296 |
111 |
1/20 |
GenBank:NC_004993 |
|
Cucumis sativus |
155,293 |
24,753 |
111 |
1/20 |
GenBank:NC_007144 |
|
Eucalyptus globulus |
160,286 |
26393 |
109 |
1/20 |
GenBank:NC_008115 |
|
Huperzia lucidula |
154,373 |
15,314 |
119 |
1/20 |
GenBank:NC_006861 |
|
Lactuca sativa |
152,765 |
25,033 |
111 |
1/20 |
GenBank:NC_007578 |
|
Lotus japonicus |
150,519 |
25,156 |
109 |
1/20 |
GenBank:NC_002694 |
|
Marchantia polymorpha |
121,024 |
10,058 |
120 |
1/19 |
GenBank:NC_001319 |
|
Nicotiana tabacum |
155,939 |
25,341 |
110 |
1/20 |
GenBank:NC_001879 |
|
Nymphaea alba |
159,930 |
25,177 |
111 |
1/20 |
GenBank:NC_006050 |
|
Oenothera elata |
163,935 |
27,807 |
109 |
1/18 |
GenBank:NC_002693 |
|
Oryza sativa |
134,525 |
20,799 |
108 |
1/17 |
GenBank:NC_001320 |
|
Panax ginseng |
156,318 |
26,071 |
111 |
1/20 |
GenBank:NC_006290 |
|
Phalaenopsis aphrodite |
148,964 |
23,787 |
99 |
1/18 |
GenBank:NC_007499 |
|
Physcomitrella patens |
122,890 |
9,589 |
116 |
1/20 |
GenBank:NC_005087 |
|
Pinus thunbergii |
119,707 |
- |
106 |
1/15 |
GenBank:NC_001631 |
|
Saccharum officinarum |
141,182 |
22795 |
108 |
1/17 |
GenBank:NC_006084 |
|
Spinacia oleracea |
150,725 |
25,073 |
110 |
1/19 |
GenBank:NC_002202 |
|
Triticum aestivum |
134,545 |
20,703 |
108 |
1/17 |
GenBank:NC_002762 |
|
Zea mays |
140,384 |
22,748 |
108 |
1/17 |
GenBank:NC_001666 |
|
Prasinophyceae |
|||||
|
Nephroselmis olivacea |
200,799 |
46,137 |
128 |
0 |
GenBank:NC_000927 |
|
Trebouxiophyceae |
|||||
|
Chlorella vulgaris |
150,613 |
- |
112 |
3/0 |
GenBank:NC_001865 |
|
Ulvophyceae |
|||||
|
Oltmannsiellopsis viridis |
151,933 |
18,510 |
104 |
5/0 |
GenBank:NC_008099 |
|
Pseudendoclonium akinetum |
195,867 |
6,039 |
105 |
27/0 |
GenBank:NC_008114 |
|
Chlorophyceae |
|||||
|
Chlamydomonas reinhardtii |
203,827 |
22,211 |
94 |
5/2 |
GenBank:NC_005353 |
|
Scenedesmus obliquus |
161,452 |
12,022 |
96 |
7/2 |
GenBank:NC_008101 |
|
Stigeoclonium helveticum |
223,902 |
- |
97 |
16/5 |
GenBank:DQ630521 |
|
|
|||||
|
a Genes present in the IR were counted only once. Pseudogenes, unique ORFs and intron ORFs were not taken into account. b Numbers of group I and group II introns are given before and after the slash, respectively. |
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|
Lemieux et al. BMC Biology 2007 5:2 doi:10.1186/1741-7007-5-2 |
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