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Group I introns in Oltmannsiellopsis cpDNA |
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| ORF |
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| Designation |
Subgroupa |
Size (bp) |
Locationb |
Conserved motifc |
Size (codons) |
|
|
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| Ov.petB.1 |
IB |
1322 |
L8 |
LAGLIDADG (2) |
264 |
| Ov.psbA.1 |
IA2 |
1127 |
L6 |
GIY-YIG |
240 |
| Ov.rrl.1 |
IB4 |
830 |
L8 |
LAGLIDADG (1) |
167 |
| Ov.rrl.2 |
IB4 |
1129 |
L9.1 |
LAGLIDADG (2) |
250 |
| Ov.rrl.3 |
IA3 |
767 |
L6 |
LAGLIDADG (1) |
165 |
|
a Introns were classified according to Michel and Westhof [44]. The subcategory of the Ov.petB.1 intron could not be identified unambiguously. b L followed by a number refers to the loop extending the base-paired region identified by the number. c The conserved motif in the predicted homing endonuclease is given, with the number of copies of the LAGLIDADG motif indicated in parentheses. | |||||
Pombert et al. BMC Biology 2006 4:3 doi:10.1186/1741-7007-4-3 |
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