Table 2

Predominant Pfam domains within the chromosome 11 predicted rice proteome. All non-TE related proteins were searched using the Hmmpfam program and Pfam domains above the trusted cutoff were parsed out. Only the top 20 Pfam domains are listed.

Pfam accession

Numbers of matched proteins

Pfam common name


PF00560

166

Leucine Rich Repeat

PF00069

106

Protein kinase domain

PF00931

102

NB-ARC domain

PF00646

78

F-box domain

PF00023

32

Ankyrin repeat

PF00097

29

Zinc finger, C3HC4 type (RING finger)

PF01535

23

PPR repeat

PF00098

21

Zinc knuckle

PF05699

19

hAT family dimerisation domain

PF06654

19

Protein of unknown function (DUF1165)

PF07197

19

Protein of unknown function (DUF1409)

PF04578

14

Protein of unknown function, DUF594

PF00036

13

EF hand

PF00076

13

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

PF03018

13

Dirigent-like protein

PF00067

12

Cytochrome P450

PF00400

12

WD domain, G-beta repeat

PF00651

12

BTB/POZ domain

PF00704

12

glycosyl hydrolase, family 18

PF00106

11

oxidoreductase, short chain dehydrogenase/reductase family


The Rice Chromosomes 11 and 12 Sequencing Consortia* BMC Biology 2005 3:20   doi:10.1186/1741-7007-3-20

Open Data