Table 1 |
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Summary of our re-analysis of 28 published phylotypes proposed to represent novel high-level eukaryotic diversity |
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Phylotype |
GenBank accession number |
Taxonomic status proposed after our re-analysis |
Reference |
|
|
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Previously undetected chimeric sequences |
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CS_E042 |
AY046663 |
1/2 = CS_E028 (Dinoflagellata)/2/2 = CS_E022 (Jakobidae) |
Edgcomb et al. 2002 [7] |
|
LEMD145 |
AF372805 |
1/2 = undet. Ascomycota/2/2 = LEMD003 (Gregarinia) |
Dawson & Pace 2002 [5] |
|
LEMD119 |
AF372777 |
1/2 = undet. Apicomplexa/2/2 = LEMD003 (Gregarinia) |
Dawson & Pace 2002 [5] |
|
Misplaced fast-evolving phylotypes |
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|
LEMD267 |
AF372778 |
Lobosea (Amoebozoa) |
Dawson & Pace 2002 [5] |
|
C1_E016 |
AY046618 |
Dinoflagellata (Alveolata) |
Edgcomb et al. 2002 [7] |
|
C3_E014 |
AY046873 |
Apicomplexa (Alveolata) |
Edgcomb et al. 2002 [7] |
|
C1_E017 |
AY046619 |
Apicomplexa (Alveolata) |
Edgcomb et al. 2002 [7] |
|
C2_E016 |
AY046806 |
Apicomplexa (Alveolata) |
Edgcomb et al. 2002 [7] |
|
BOLA267 |
AF372774 |
Apicomplexa (Alveolata) |
Dawson & Pace 2002 [5] |
|
LEMD134 |
AF372806 |
Apicomplexa (Alveolata) |
Dawson & Pace 2002 [5] |
|
LEMD003 |
AF372797 |
Apicomplexa (Alveolata) |
Dawson & Pace 2002 [5] |
|
CS_E036 |
AY046668 |
Labyrinthulata (Stramenopiles) |
Edgcomb et al. 2002 [7] |
|
LEMD052 |
AF372744 |
Cercozoa (Rhizaria) |
Dawson & Pace 2002 [5] |
|
Phylotypes identified with an increasing molecular sampling of described organisms |
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AT4-11 |
AF530526 |
Apusomonadidae (Apusozoa) |
López-García et al. 2003 [8] |
|
BOLA187 |
AF372745 |
'Mastigamoeba invertens group' |
Dawson & Pace 2002 [5] |
|
BOLA366 |
AF372746 |
'Mastigamoeba invertens group' |
Dawson & Pace 2002 [5] |
|
CS_E022 |
AY046649 |
Jakobidae (Excavates) |
Edgcomb et al. 2002 [7] |
|
C1_E027 |
AY046628 |
'Retortamonas/Carpediemonas group' (Excavates) |
Edgcomb et al. 2002 [7] |
|
Phylotypes that passed our checking procedure: |
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|
DH145-EKD11 |
AF290065 |
possibly novel high-level lineage |
López-García et al. 2001 [3] |
|
DH148-5-EKD18 |
AF290084 |
possibly novel high-level lineage |
López-García et al. 2001 [3] |
|
C3_E012 |
AY046842 |
possibly novel high-level lineage |
Edgcomb et al. 2002 [7] |
|
C2_E026 |
AY046816 |
possibly novel high-level lineage |
Edgcomb et al. 2002 [7] |
|
CS_R003 |
AY046643 |
possibly novel high-level lineage |
Edgcomb et al. 2002 [7] |
|
BOLA212 |
AF372767 |
possibly novel high-level lineage |
Dawson & Pace 2002 [5] |
|
BOLA458 |
AF372771 |
possibly novel high-level lineage |
Dawson & Pace 2002 [5] |
|
BOLA048 |
AF372821 |
possibly novel high-level lineage |
Dawson & Pace 2002 [5] |
|
BAQA065 |
AF372825 |
possibly novel high-level lineage |
Dawson & Pace 2002 [5] |
|
AT4-68 |
AF530543 |
possibly novel high-level lineage |
López-García et al. 2003 [8] |
|
|
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Berney et al. BMC Biology 2004 2:13 doi:10.1186/1741-7007-2-13 |
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