Additional file 3.

Newick file used to test the alternative hypothesis for each patient suspected to be part of the outbreak. This tree was manually edited to replace the sequence labeled ‘test’ by the clade conformed by all the sequences derived from each patient and its likelihood was compared with that of the original tree (without the ‘test’ sequence).

Format: TXT Size: 39KB Download file

González-Candelas et al. BMC Biology 2013 11:76   doi:10.1186/1741-7007-11-76