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Open Access Research article

Genome mining for methanobactins

Grace E Kenney and Amy C Rosenzweig*

Author Affiliations

Departments of Molecular Biosciences and of Chemistry, Northwestern University, Evanston, IL 60208, USA

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BMC Biology 2013, 11:17  doi:10.1186/1741-7007-11-17

Published: 26 February 2013

Additional files

Additional file 1:

Figures S1-S6. Figures of additional Mbn structures, alignment of potential biosynthesis protein in Group V operons, alignment of MbnM sequences, alignment of MbnT sequences and phylogenetic tree, figure of alternate Mbn regulation scheme, and alignment of MbnP sequences.

Format: PDF Size: 886KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 2:

Table S1. Table containing information regarding the GenBank or JGI contigs/scaffolds and locus IDs (where present) for the genes discussed in the paper.

Format: XLSX Size: 47KB Download file

Open Data

Additional file 3:

Annotated C. basilensis B-8 scaffold 1267_1, GenBank format. A GenBank-formatted file consisting of C. basilensis B-8 scaffold 1267_1 (containing an Mbn operon), as annotated by the IGS.

Format: GBF Size: 21KB Download file

Open Data

Additional file 4:

Annotated M. parvus OBBP contig 003, GenBank format. A GenBank-formatted file consisting of M. parvus OBBP contig003 (containing an Mbn operon), as annotated by the IGS.

Format: GBF Size: 348KB Download file

Open Data

Additional file 5:

Annotated M. parvus OBBP contig 041, GenBank format. A GenBank-formatted file consisting of M. parvus OBBP contig041 (containing an Mbn operon), as annotated by the IGS.

Format: GBF Size: 73KB Download file

Open Data

Additional file 6:

Annotated P. fluorescens NZI7 contig00040_contig01, GenBank format. A GenBank-formatted file consisting of P. fluorescens NZI7 contig00040_contig01 (containing an Mbn operon), as annotated by the IGS.

Format: GBF Size: 63KB Download file

Open Data

Additional file 7:

HMMER3 hidden Markov model for MbnA. A HMMER3-compatible hidden Markov model constructed using a curated alignment of the MbnA sequences discussed in the paper.

Format: HMM Size: 13KB Download file

Open Data

Additional file 8:

HMMER3 hidden Markov model for MbnB. A HMMER3-compatible hidden Markov model constructed using a curated alignment of the complete MbnB sequences discussed in the paper.

Format: HMM Size: 118KB Download file

Open Data

Additional file 9:

HMMER3 hidden Markov model for MbnC. A HMMER3-compatible hidden Markov model constructed using a curated alignment of the MbnC sequences discussed in the paper.

Format: HMM Size: 86KB Download file

Open Data