Research article
Comparison of molecular dynamics and superfamily spaces of protein domain deformation
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* Corresponding authors: Modesto Orozco modesto@mmb.pcb.ub.es - José-María Carazo carazo@cnb.csic.es
- † Equal contributors
1 Centro Nacional de Biotecnología-CSIC, Campus Universidad Autónoma, 28049 Madrid, Spain
2 Molecular Modeling and Bioinformatics Unit, IRB-BSC Joint Research Program in Computational Biology, Institute for Research in Biomedicine, Josep Samitier 1-5, Barcelona 08028, Spain
3 University of California, San Francisco, Department of Biopharmaceutical Sciences and Pharmaceutical Chemistry, 1700 4th St. UCSF/MC 2552, Byers Hall Room 503, San Francisco, CA 94158-2330, USA
4 The Scripps Research Institute, Department of Molecular Biology, 10550 North Torrey Pines Road, Mail TPC-28, La Jolla, California, 92037, USA
5 Departament Arquitectura de Computadores y Automática, Facultad de Ciencias Físicas, Universidad Complutense, 28040 Madrid, Spain
6 Departament de Bioquímica i Biología Molecular, Facultat de Biología, Universitat de Barcelona, Avgda Diagonal 645, Barcelona 08028, Spain
7 National Institute of Bioinformatics, Parc Científic de Barcelona, Josep Samitier 1-5, Barcelona 08028, Spain
8 National Institute of Bioinformatics, Centro Nacional de Biotecnología, CSIC, Madrid, Spain
9 Barcelona Supercomputing Center, Jordi Girona 29, Barcelona 08034, Spain
BMC Structural Biology 2009, 9:6 doi:10.1186/1472-6807-9-6
Published: 17 February 2009Additional files
Additional file 1:
Table of the domains and superfamilies employed for this study. Table of the domains and superfamilies employed for this study, with their function and structural class. The domains are sorted by the similarity between the SF- and MD-spaces according to the Hess metric.
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