Table 11

Reconstruction from ab initio and template-based 4-class maps

Maps

RMSD

TM-score


MAI

14.60

0.27

MTE

9.46

0.51


Reconstruction algorithm results for models derived from multi-class predicted contact maps with (MTE) and without (MAI) allowing homology information. Note that, since no templates are allowed that show a sequence identity greater than 95% to the query, the MTE results are based on a mixture of good, bad and no templates (see Figure 6 for a sample distribution of template quality). The reported values are the average over the 10 runs of simulated annealing.

Walsh et al. BMC Structural Biology 2009 9:5   doi:10.1186/1472-6807-9-5

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