Additional file 1.

Supplementary Methods and Supplementary Results. There are three sections in the Supplementary Methods as follows: (1) The method of embedding the inter-cluster network into 3D space. (2) The definition of F-measure. (3) The coloring method for clusters in the 3D network. In the Supplementary Results, tertiary structures of fragments in the same cluster and those in the same community are discussed.

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Ito et al. BMC Structural Biology 2009 9:34   doi:10.1186/1472-6807-9-34