Research article
Universal partitioning of the hierarchical fold network of 50-residue segments in proteins
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* Corresponding author: Junichi Higo higo@protein.osaka-u.ac.jp
1 Graduate School of Frontier Science, University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8561, Japan
2 School of Life Sciences, Tokyo University of Pharmacy and Life Sciences, 1432-1 Horinouchi, Hachioji, Tokyo, 192-0392, Japan
3 Computational Biology Research Center (CBRC), National Institute of Advanced Industrial Science and Technology (AIST), 2-42 Aomi, Koto-ku, Tokyo 135-0064, Japan
4 PharmaDesign, Inc., 2-19-8 Hacchobori, Chuo-ku, Tokyo 104-0032, Japan
5 The Center for Advanced Medical Engineering and Informatics, Osaka University, Open Laboratories for Advanced Bioscience and Biotechnology, 6-2-3, Furuedai, Suita, Osaka 565-0874, Japan
BMC Structural Biology 2009, 9:34 doi:10.1186/1472-6807-9-34
Published: 20 May 2009Additional files
Additional file 1:
Supplementary Methods and Supplementary Results. There are three sections in the Supplementary Methods as follows: (1) The method of embedding the inter-cluster network into 3D space. (2) The definition of F-measure. (3) The coloring method for clusters in the 3D network. In the Supplementary Results, tertiary structures of fragments in the same cluster and those in the same community are discussed.
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