Table 1

VAST Search results for domains with boundary conflict from the medium redundancy subset of MMDB.

Structure Domains Total

Sequence Domains Total

Structure Domains (> = 20% Id)

Sequence Domains (> = 20% Id)

Structure Domains (<20% Id)

Sequence Domains (<20% Id)

Homologs Found

9790 (15%)

5476 (21%)

2592 (65%)

1814 (75%)

7198 (11%)

3662 (16%)

Total Hits

65150

25560

3994

2416

61156

23144

Thompson et al. BMC Structural Biology 2009 9:33   doi:10.1186/1472-6807-9-33