Table 3 |
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|
Proteins used in performance testing. |
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|
PDB ID |
Residues |
Atoms |
Protein |
|
|
|||
|
175 |
1574 |
retinol-binding protein |
|
|
388 |
2824 |
potassium channel |
|
|
748 |
5669 |
alcohol dehydrogenase |
|
|
1660 |
12508 |
phosphoglycerate kinase |
|
|
3315 |
25248 |
F1 ATPase inhibited by DCCD |
|
|
8015 |
59674 |
GroEL-GroES-(ADP)7 chaperonin complex |
|
|
|
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|
The performance tests graphed in Figures 10 to 12 were made on a Macintosh 2.16 GHz Intel Core 2 Duo with 2 GB of RAM and an ATI Radeon X1600 graphics card with 256 MB VRAM. To prevent an out of memory error for the largest protein tested, the chaperonin complex, the maximum size of the Java heap was increased to 512 MB by adding "-Xmx512m" as an argument to the java command in the run.sh script provided with the ProteinShader distribution. |
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|
Weber BMC Structural Biology 2009 9:19 doi:10.1186/1472-6807-9-19 |
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