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Mihel J
Šikić M
Tomić S
Jeren B
Vlahoviček K

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Šikić M
Tomić S
Jeren B
Vlahoviček K
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Software

PSAIA – Protein Structure and Interaction Analyzer

Josip Mihel¹ , Mile Šikić¹ , Sanja Tomić² , Branko Jeren¹ and Kristian Vlahoviček³

¹Department of Electronic Systems and Information Processing, Faculty of Electrical Engineering and Computing, University of Zagreb, Unska 3, 10000 Zagreb, Croatia

²Rudjer Bošković Institute, Bijenička 54, HR-10000 Zagreb, Croatia

³Bioinformatics Group, Department of Molecular Biology, Division of Biology, Faculty of Science, University of Zagreb, Horvatovac 102a, 10000 Zagreb, Croatia

author email corresponding author email

BMC Structural Biology 2008, 8:21doi:10.1186/1472-6807-8-21


Published:	9 April 2008

Additional files

Additional file 1:

PDB:1LFD – output of PSAIA Structure analyser in table form. This file includes information about ASA, DPX, CX and hydrophobicity values per residue of PDB:1LFD obtained by PSAIA. In this case, the chains were calculated in bound form.

Format: TXT Size: 239KB Download file

Additional file 2:

PDB:1LFD – output of PSAIA Structure analyser in XML form. This file includes information about ASA, DPX, CX and hydrophobicity values per residue of PDB:1LFD obtained by PSAIA. In this case, the chains were calculated in bound form.

Format: XML Size: 667KB Download file

Additional file 3:

PDB:1LFD binding residues – output of PSAIA Interaction Analyser in table form. This file includes information about residues that are included in interaction in PDB:1LFD obtained by maximum distance algorithm from PSAIA application.

Format: TXT Size: 3KB Download file

Additional file 4:

PDB:1LFD binding residues – output of PSAIA Interaction Analyser in XML form. This file includes information about residues that are included in interaction in PDB:1LFD obtained by maximum distance algorithm from PSAIA application.

Format: XML Size: 23KB Download file

Additional file 5:

XML Schema for binding residues. This is the XSD schema definition for XML output file (Additional file 6)

Format: XSD Size: 1KB Download file

Additional file 6:

PDB:1LFD binding status – output of PSAIA Interaction Analyser in table form. This file includes information on interaction status (in interaction or not in interaction) of a particular residue in PDB:1LFD obtained by maximum distance algorithm from PSAIA application.

Format: TXT Size: 17KB Download file

Additional file 7:

PDB:1LFD binding status – output of PSAIA Interaction Analyser in XML form. This file includes information on interaction status (in interaction or not in interaction) of a particular residue in PDB:1LFD obtained by maximum distance algorithm from PSAIA application.

Format: XML Size: 124KB Download file

Additional file 8:

XML Schema for binding status. This is the XSD schema definition for XML output file (Additional file 9)

Format: XSD Size: 1KB Download file

Additional file 9:

PDB:1LFD contacts – output of PSAIA Interaction Analyser in table form. This file includes information on interaction partners in PDB:1LFD obtained by maximum distance algorithm from PSAIA application.

Format: TXT Size: 16KB Download file

Additional file 10:

PDB:1LFD contacts – output of PSAIA Interaction Analyser in XML form. This file includes information on interaction partners in PDB:1LFD obtained by maximum distance algorithm from PSAIA application.

Format: XML Size: 110KB Download file

Additional file 11:

XML Schema for residue contacts. This is the XSD schema definition for XML output file.

Format: TXT Size: 2KB Download file

Additional file 12:

XML Schema for peptide structure in bound form. This is the XSD schema definition for XML output file.

Format: TXT Size: 6KB Download file

Additional file 13:

XML Schema for peptide structure in unbound form. This is the XSD schema definition for XML output file.

Format: TXT Size: 6KB Download file

Additional file 14:

PDB:1LFD – output of DSSP application. This file includes information about secondary structure and total ASA per residue of PDB:1LFD obtained from DSSP application.

Format: TXT Size: 72KB Download file

Additional file 15:

PDB:1LFD – output of NACCESS application. This file includes information about total, relative, backbone, side-chain, polar and non-polar ASA per residue of PDB:1LFD obtained from NACCESS application.

Format: TXT Size: 41KB Download file

Additional file 16:

PDB:1LFD – CX output of PSAIA Structure Analyser. This file includes information about CX per residue of PDB:1LFD obtained by PSAIA. In this case, the chains were calculated in unbound form.

Format: TXT Size: 72KB Download file

Additional file 17:

PDB:1LFD – output of CX server http://hydra.icgeb.trieste.it/cx/ webcite. This file includes information about maximum, minimum and average CX values per residue of PDB:1LFD obtained from CX server.

Format: TXT Size: 25KB Download file

Additional file 18:

PDB:1LFD – output of dpx server http://hydra.icgeb.trieste.it/dpx/ webcite. This file includes information about maximum, minimum and average CX values per residue of PDB:1LFD obtained from CX server.

Format: TXT Size: 25KB Download file

Additional file 19:

PSAIA – MS Windows setup file. Setup file for installation PSAIA, PSA and PIA. Newer versions of the application can be downloaded from the project web site.

Format: EXE Size: 7.8MB Download file

Additional file 20:

PSAIA – Linux installer. PSAIA installer for a x86 Linux platform. Linux installers for other architectures as well as the source code can be downloaded from the project web site.

Format: BIN Size: 7.2MB Download file