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Open Access Highly Accessed Research article

Comparative Analysis of Protein Structure Alignments

Gabriele Mayr12, Francisco S Domingues2 and Peter Lackner1*

Author Affiliations

1 Department of Molecular Biology, University of Salzburg, Hellbrunnerstrasse 34, 5020 Salzburg, Austria

2 Max-Planck-Institut für Informatik, Stuhlsatzenhausweg 85, 66123 Saarbrücken, Germany

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BMC Structural Biology 2007, 7:50  doi:10.1186/1472-6807-7-50

Published: 26 July 2007

Additional files

Additional file 1:

The ASTRAL40 dataset.

Format: TXT Size: 17KB Download file

Open Data

Additional file 2:

The SISY dataset.

Format: TXT Size: 2KB Download file

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Additional file 3:

Figures S1, S2, S3, S4, S5.

Format: PDF Size: 218KB Download file

This file can be viewed with: Adobe Acrobat Reader

Open Data

Additional file 4:

Table of SISY set alignment accuracy. Alignment accuracy in percentage of number of aligned reference positions. Mol1, Mol2: PDB code and chain identifier of the aligned molecules. Ref: Length of reference alignment.

Format: TXT Size: 2KB Download file

Open Data

Additional file 5:

The RIPC dataset. Type: Structure alignment problem of a pair (R: repetition, I: indels, P: permutation, C: conformational variability).

Format: TXT Size: 2KB Download file

Open Data

Additional file 6:

Table of RIPC set alignment accuracy. Alignment accuracy in percentage of number of aligned reference positions. Type: Structure alignment problem of a pair (R:repetition, I: indels, P: permutation, C: conformational variability). Ref: Length of reference alignment.

Format: TXT Size: 1KB Download file

Open Data

Additional file 7:

Reference alignments for the RIPC set.

Format: TXT Size: 17KB Download file

Open Data