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Showing Procarb40 dataset. (Some cells are left empty as no Pfam ID could be found for them). |
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| PDB ID |
Pfam ID |
Ligand name |
Ligand formula |
Ligand ID |
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| 1A7C |
Serpins |
ALPHA-D-MANNOSE N-ACETYL-D-GALACTOSAMINE N-METHYLCARBONYLTHREONINE |
C6 H12 O6 3(C8 H15 N1 O6) 2(C6 H11 N1 O4) |
MAN NGA THC |
| 1AU1 |
Interferon |
ZINC ION FUCOSE GLUCOSE D-GALACTOSE ALPHA-D-MANNOSE |
ZN1 2+ 2(C6 H12 O6) 4(C6 H12 O6) C6 H12 O6 2(C1 H12 O6) |
ZN FUC GLC GAL MAN |
| 1AXM |
Fibroblast Growth Factors |
SELENOMETHIONINE O2-SULFO-GLUCURONIC ACID N,O6-DISULFO-GLUCOSAMINE |
6(C5 H11 N1 O2 SE1) 7(C6 H10 O10 S1) 8(C6 H13 N1 O11 S2) |
MSE IDS SGN |
| 1CVN |
Lectin legB |
CALCIUM ION MANGANESE (II) ION ALPHA-D-MANNOSE |
4(CA1 2+) 4(MN1 2+) 12(C1 H12 O6) |
CA MN MAN |
| 1E6N |
CBM_5_12 Glycol_hydro_18 |
GLYCEROL SULFATE ION N-ACETYL-D-GLUCOSAMINE |
C3 H8 O3 12(O4 S1 2-) 10(C8 H15 N1 O6) |
GOL SO4 NAG |
| 1FV3 |
Toxin_R_bind_C Toxin_R_bind_N Toxin_trans |
GLUCOSE PHOSPHATE ION D-GALACTOSE ETHYL-TRIMETHYL-SILANE N-ACETYL-D-GALACTOSAMINE 5-N-ACETYL-BETA-D-NEURAMINIC ACID 5-N-ACETYL-ALPHA-D-NEURAMINIC ACID |
2(C6 H12 O6) O4 P1 3- 4(C6 H12 O6) 2(C5 H14 SI1) 2(C8 H15 N1 O6) 2(C11 H19 N1 O9) 4(C11 H19 N1 O9) |
GLC PO4 GAL CEQ NGA SLB NAN |
| 1FWU |
Ricin_B_lectin |
FUCOSE O3-SULFONYLGALACTOSE ALPHA-METHYL-N-ACETYL-D-GLUCOSAMINE |
C6 H12 O5 C6 H12 O9 S1 C9 H17 N1 O6 |
FUC SGA MAG |
| 1G1T |
EGF Lectin C |
FUCOSE CALCIUM ION D-GALACTOSE O-SIALIC ACID N-ACETYL-O-METHYL-D-GLUCOSAMINE |
C6 H12 O5 CA1 2+ C6 H12 O6 C11 H19 N1 O9 C9 H17 N1 O6 |
FUC CA GAL SIA 1NA |
| 1G5N |
Annexin |
CALCIUM ION N,O6-DISULFO-GLUCOSAMINE 1,4-DIDEOXY-O2-SULFO-GLUCURONIC ACID 1,4-DIDEOXY-5-DEHYDRO-O2-SULFO-GLUCURONIC ACID |
9(CA1 2+) 4(C6 H13 N1 O11 S2) 2(C6 H10 O8 S1) 2(C6 H8 O8 S1) |
CA SGN IDU UAP |
| 1GMN |
Kringle PAN |
O2-SULFO-GLUCURONIC ACID N,O6-DISULFO-GLUCOSAMINE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID |
3(C6 H10 O10 S1) 2(C6 H13 N1 O11 S2) 2(C8 H18 N2 O4 S1) |
IDS SGN EPE |
| 1GUI |
CBM4/9 |
CALCIUM ION GLYCEROL BETA-D-GLUCOSE |
CA1 2+ 5(C3 H8 O3) 6(C6 H12 O6) |
CA GOL BGC |
| 1GWM |
Family 29 carbohydrate binding module |
GLUCOSE COBALT (II) ION 1,2-ETHANEDIOL BETA-D-GLUCOSE |
C6 H14 O6 CO1 2+ 8(C2 H6 O2) 5(C6 H12 O6) |
GLC CO EDO BGC |
| 1IW6 |
Bac_rhodopsin |
GLUCOSE RETINAL D-GALACTOSE ALPHA-D-MANNOSE 2,3-DI-PHYTANYL-GLYCEROL 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE |
C6 H12 O6 C20 H28 O1 C6 H12 O6 C6 H12 O6 C43 H88 O3 4(C46 H94 O11 P2 2-) |
GLC RET GAL MAN L2P L3P |
| 1J8R |
PapG _N |
GLUCOSE D-GALACTOSE N-ACETYL-D-GLUCOSAMINE SELENOMETHIONINE |
C6 H12 O6 2(C6 H12 O6) C8 H15 N1 O6 3(C5 H11 N1 O2 SE1) |
GLC GAL NAG MSE |
| 1JPC |
B_lectin D-mannose binding lectin |
ALPHA-D-MANNOSE |
8(C1 H12 O6) |
MAN |
| 1LGB |
Lectin_legB Transferrin |
FUCOSE CALCIUM ION D-GALACTOSE MANGANESE (II) ION ALPHA-D-MANNOSE N-ACETYL-D-GLUCOSAMINE |
C6 H12 O6 CA1 2+ C6 H12 O6 MN1 2+ 3(C1 H12 O6) 4(C8 H15 N1 O6) |
FUC CA GAL MN MAN NAG |
| 1M5J |
ALPHA-D-MANNOSE O1-PENTYL-MANNOSE 2- [N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID |
8(C6 H12 O6) C11 H22 O6 C8 H17 N1 O3 S1 |
MAN OPM NHE |
|
| 1OH4 |
CALCIUM ION GLYCEROL SULFATE ION BETA-D-MANNOSE ALPHA D-GALACTOSE |
CA1 2+ 2(C3 H8 O3) O4 S1 2- 5(C6 H12 O6) 2(C6 H12 O6) |
CA GOL SO4 BMA GLA |
|
| 1Q8V |
Lectin_legB |
CALCIUM ION MANGANESE (II) ION ALPHA-D-MANNOSE PYROGLUTAMIC ACID |
2(CA1 2+) 2(MN1 2+) 5(C6 H12 O6) 2(C5 H7 N1 O3) |
CA MN MAN PCA |
| 1QFO |
V-set |
GLUCOSE D-GALACTOSE O-SIALIC ACID |
2(C6 H12 O6) 2(C6 H12 O6) 3(C11 H19 N1 O9) |
GLC GAL SIA |
| 1RID |
Sushi |
O2-SULFO-GLUCURONIC ACID N,O6-DISULFO-GLUCOSAMINE |
8(C6 H10 O10 S1) 8(C6 H13 N1 O11 S2) |
IDS SGN |
| 1SE3 |
Stap_Strp_tox_C Stap_Strp_toxin |
GLUCOSE D-GALACTOSE O-SIALIC ACID |
C6 H12 O6 C6 H12 O6 C11 H19 N1 O9 |
GLC GAL SIA |
| 1SL4 |
Lectin_C |
CALCIUM ION ALPHA-D-MANNOSE |
3(CA1 2+) 4(C6 H12 O6) |
CA MAN |
| 1SLC |
Gal-bind_lectin |
D-GALACTOSE ALPHA-D-MANNOSE N-ACETYL-D-GLUCOSAMINE |
4(C6 H12 O6) 6(C1 H12 O6) 6(C8 H15 N1 O6) |
GAL MAN NAG |
| 1T0W |
Chitin_bind_1 |
AMINO GROUP N-ACETYL-D-GLUCOSAMINE |
H2 N1 3(C8 H15 N1 O6) |
NH2 NAG |
| 1T8U |
Sulfotransfer_1 |
SODIUM ION SULFATE ION O2-SULFO-GLUCURONIC ACID N,O6-DISULFO-GLUCOSAMINE ADENOSINE-3'-5'-DIPHOSPHATE 1,4-DIDEOXY-5-DEHYDRO-O2-SULFO-GLUCURONIC ACID |
2(NA1 1+) O4 S1 2- C6 H10 O10 S1 2(C6 H13 N1 O11 S2) 2(C10 H15 N5 O10 P2) C6 H8 O8 S1 |
NA SO4 IDS SGN A3P UAP |
| 1ULE |
D-GALACTOSE N-ACETYL-D-GLUCOSAMINE |
4(C6 H12 O6) 2(C8 H15 N1 O6) |
GAL NAG |
|
| 1UX7 |
CBM_6 |
CALCIUM ION SULFATE ION BETA-D-XYLOPYRANOSE |
2(CA1 2+) O4 S1 2- 3(C5 H10 O5) |
CA SO4 XYP |
| 1UY4 |
SODIUM ION CALCIUM ION GLYCEROL BETA-D-XYLOPYRANOSE |
NA1 1+ CA1 2+ C3 H8 O3 4(C5 H10 O5) |
NA CA GOL XYP |
|
| 1UYY |
CBM_6 |
CALCIUM ION BETA-D-GLUCOSE |
4(CA1 2+) 7(C6 H12 O6) |
CA BGC |
| 1VBO |
ALPHA-D-MANNOSE N-ACETYLALANINE |
20(C6 H12 O6) 8(C5 H9 N1 O3) |
MAN AYA |
|
| 1VPS |
Polyoma Coat |
D-GALACTOSE O-SIALIC ACID N-ACETYL-D-GLUCOSAMINE |
5(C6 H12 O6) 10(C11 H19 N1 O9) 5(C8 H15 N1 O6) |
GAL SIA NAG |
| 1W9T |
CBM_6 |
SODIUM ION XYLOPYRANOSE BETA-D-XYLOPYRANOSE |
6(NA1 1+) 2(C5 H10 O5) 8(C5 H10 O5) |
NA XYS XYP |
| 1XT3 |
Toxin_1 |
CITRIC ACID N,O6-DISULFO-GLUCOSAMINE 1,4-DIDEOXY-O2-SULFO-GLUCURONIC ACID |
C6 H8 O7 3(C6 H13 N1 O11 S2) 3(C6 H10 O8 S1) |
CIT SGN IDU |
| 2BOS |
SLT beta |
BUTYL GROUP GLUCOSE D-GALACTOSE |
3(C4 H9) 5(C6 H12 O6) 14(C6 H12 O6) |
BUT GLC GAL |
| 2FCP |
Plug TonB_dep_Rec |
GLUCOSE PHOSPHATE ION D-GALACTOSE NICKEL (II) ION 3-OXO-BUTYRIC ACID 3-OXO-PENTADECANOIC ACID GLUCOSAMINE 1-PHOSPHATE GLUCOSAMINE 4-PHOSPHATE ETHANOL AMINE PYROPHOSPHATE L-GLYCERO-D-MANNO-HEPTOPYRANOSE 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID 2-TRIDECANOYLOXY-PENTADECANOIC ACID |
C6 H12 O6 O4 P1 3- 2(C6 H12 O6) 2(NI1 2+) C4 H6 O3 C15 H28 O3 C6 H14 N1 O8 P1 C6 H14 N1 O8 P1 C2 H9 N1 O7 P2 2(C7 H14 O7) 2(C8 H14 O8) 2(C28 H54 O4) |
GLC PO4 GAL NI LIN LIM GP1 GP4 EA2 GMH KDO LIL |
| 2MPR |
LamB |
GLUCOSE CALCIUM ION |
C6 H12 O6 Ca 2+ |
GLC CA |
| 3CHB |
Enterotoxin b |
GLUCOSE D-GALACTOSE O-SIALIC ACID N-ACETYL-D-GALACTOSAMINE N-(EHTYLSULFITE)MORPHOLINE |
5(C6 H12 O6) 10(C6 H12 O6) 5(C11 H19 N1 O9) 5(C8 H15 N1 O6) 2(C6 H14 N1 O4 S1) |
GLC GAL SIA NGA MES |
| 3MAN |
Cellulase |
ALPHA-D-MANNOSE |
3(C6 H12 O6) |
MAN |
| 3MBP |
GLUCOSE |
3(C6 H12 O6) |
GLC |
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Malik and Ahmad BMC Structural Biology 2007 7:1 doi:10.1186/1472-6807-7-1 |
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