Table 7

Evaluation of the SOM distance with the RDFs for the prediction of enzyme function of transferases
Dataset* AUC
SOM distance SiteEngine Alignment
MAMMOTH 0.800 0.626 0.376
Needleman-Wunsch 0.790 0.678 0.474

*The datasets were created by culling the pairs with greater than 15% pairwise identity. The SOM was run using an RDF with a cut-Gaussian neighborhood function in a [40, 19]-sized rectangular lattice.

Ueno et al.

Ueno et al. BMC Structural Biology 2012 12:5   doi:10.1186/1472-6807-12-5

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