Table 6

Evaluation of the SOM distance with the RDFs for the prediction of enzyme function of oxidoreductases
Dataset* AUC
SOM distance SiteEngine Alignment
MAMMOTH 0.746 0.410 0.415
Needleman-Wunsch 0.729 0.558 0.654
Smith-Waterman 0.744 0.541 0.471

*The datasets were created by culling the pairs with greater than 25% pairwise identity. The SOM was run using an RDF with an Epanechnikov neighborhood function in a [46, 28]-sized rectangular lattice.

Ueno et al.

Ueno et al. BMC Structural Biology 2012 12:5   doi:10.1186/1472-6807-12-5

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