Table 2

SOM assignment of RDFs of oxidoreductases
Node composition EC SCOP§ Catalytic residues
Occupied by one class 2,929 (156) 1,966 (77) 949 (67)
Conflict* 129 (27) 42 (9) 112 (15)
All RDFs 4,092 (241) 2,526 (100) 1,910 (231)

The numbers indicate the RDF counts assigned to the nodes, and the number of classes is shown in parentheses. The SOM was performed by the RDF with an Epanechnikov neighborhood function in a [46, 28]-sized rectangular lattice

*One class is more than 80% of the total. §The nodes were labeled using SCOP[44].

Ueno et al.

Ueno et al. BMC Structural Biology 2012 12:5   doi:10.1186/1472-6807-12-5

Open Data