Table 3

Secondary structure prediction from the sequence and secondary structure calculation from the built structure of the T. gondii 12‚ÄČkDa ES protein
1 6 11 16 21 26 31 36 41 46 51 56
Sequence MPVHH VTTEA QFKSL IEENE MVLVD FYAVW CGPCR QVAPL VEAMS EKPEY AKVKF VKIDV
Jpred --BBB B--AA AAAAA AAA-- -BBBB BB--- ---AA AAAAA AAAAA AAA-- ---BB BBBB-
PORTER ---BB B--AA AAAAA AA--- BBBBB BB--- -AAAA AAAAA AAAAA AA--- ---BB BBBB-
Prof --BBB BB--- AAAAA AA--- BBBBB BB--- ---AA AAAAA AAAAA AA--- --BBB BBBBB
APSSP2 --BB- -AAAA AAAAA A--BB BBBBB ----- -AAAA AAAAA AAAAA A---- BBBBB BB---
STRIDE ---BB ---AA AAAAA AA--- BBBBB BB--- -AAAA AAAAA AAAAA A---- --BBB BBBB-
Built Model ---BB ---AA AAAAA AA--- BBBBB BB--- -AAAA AAAAA AAAAA A---- --BBB BBBB-
61 66 71 76 81 86 91 96 101 106
Sequence DELAD VAERE EINAM PTFKL FKQGK AVDTV VGANA ERVEE MVKKH L
Jpred ----A AAAAA ----- -BBBB BB--- BBBBB ----A AAAAA AAAA- -
PORTER ---AA AAAA- ----- -BBBB BB--B BBBBB B---A AAAAA AAAA- -
Prof BBBBB BBBBB ----- BBBBB BB--- BBBBB ----A AAAAA AAAA- -
APSSP2 -AAAA AAA-- BBBBB BBBBB -BBBB BBB-- --AAA AAAAA AA--- -
STRIDE --AAA AAAAA ----- -BBBB BB--B BBBBB B---A AAAAA AAAAA -
Built Model --AAA AAAAA ----- -BBBB BB--B BBBBB B---A AAAAA AAAAA -

B = Beta Sheets.

A = Alpha Helices.

Tommy et al.

Tommy et al. BMC Structural Biology 2012 12:30   doi:10.1186/1472-6807-12-30

Open Data