Table 1

Active and passive AIRs chosen for the docking experiments
Active and passive AIRs
Docking Run active AIRs passive AIRs
Baseline (BL)
Rpn13 S55, L56, L73, I74, auto
F76, P77, D78, D79,
K99, A100, G101
ubiquitin K6, L8, I44, F45, auto
A46, G47, K48, Q49,
H68, V70, R72
LP/MS filter (Ubiquitin CPORT)
Rpn13 D41, K42, D53, D54, auto
E70, D79, E81, K99
ubiquitin - F4, K6-K11, P19, Q31,
E34-Q40, R42, I44-Q49, R54,
T55, S57-N60, Q62-T66, H68,
V70, L71-G76
LP/MS (Ubiquitin CPORT)
Rpn13 D53, D54, S55, D78, auto
D79, F98, K99
ubiquitin - F4, K6-K11, P19, Q31,
E34-Q40, R42, I44-Q49, R54,
T55, S57-N60, Q62-T66, H68,
V70, L71-G76
chemical shift perturbations
Rpn13 S55, F76, D78, K99, auto
G101, R104
ubiquitin L8, F45, A46, G47, auto
K48, Q49, H68, V70
CPORT
Rpn13 Y22-E25, R27, M31, auto
T36-P40, Q50-L56, H58,
V69, D71-I74,
F76, P77, D79, V85, C88-S90,
V93, V95, K103, L105, F106,
W108, E126, C127, N129, N130
ubiquitin F4, K6-K11, P19, Q31, auto
E34-Q40, R42, I44-Q49, R54,
T55, S57-N60, Q62-T66, H68,
V70, L71-G76

Hennig et al.

Hennig et al. BMC Structural Biology 2012 12:29   doi:10.1186/1472-6807-12-29

Open Data