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Open Access Highly Accessed Research article

Peptide binding to HLA-DP proteins at pH 5.0 and pH 7.0: a quantitative molecular docking study

Atanas Patronov1, Ivan Dimitrov1, Darren R Flower2 and Irini Doytchinova1*

Author Affiliations

1 School of Pharmacy, Medical University of Sofia, 2 Dunav st, Sofia, 1000, Bulgaria

2 Life and Health Sciences, Aston University, Aston Triangle, Birmingham, B4 7ET, UK

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BMC Structural Biology 2012, 12:20  doi:10.1186/1472-6807-12-20

Published: 5 August 2012

Additional files

Additional file 1:

Test set of known HLA-DP1, DP41, DP42 and DP5 binders. The file contains a test set of 484 known peptide binders to DP proteins, parent protein NCBI GI numbers and IC50 values. It was derived from Immune Epitope Database (June 2011 release). (XLS 57 kb)

Format: XLS Size: 57KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 2:

DS-QMs for peptide binding prediction to HLA-DP1, DP41, DP42 and DP5 proteins. The file contains 8 DS-QMs: two for each HLA-DP protein derived at pH 5.0 and pH 7.0, respectively. Non-binding amino acids were assigned a binding score of −10.

Format: XLS Size: 48KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data