Table 2

DS-QMnap for HLA-DP2 binding prediction.

p1

p2

p3

p4

p5

p6

p7

p8

p9


Ala

-0.248

0.092

0.059

0.054

0.015

-0.099

-0.007

0.007

0.176

Arg

-0.151

0.041

0.057

0.430

0.178

-0.037

0.293

-0.070

-0.425

Asn

-0.209

0.058

0.015

0.062

-0.053

-0.030

0.026

-0.062

0.208

Asp

-0.364

0.009

-0.087

-0.163

-0.172

-0.255

-0.212

-0.159

-0.013

Cys

-0.223

0.053

0.001

-0.016

-0.066

-0.098

-0.002

-0.069

0.224

Gln

-0.158

0.050

0.004

0.103

-0.025

-0.031

0.054

-0.108

0.207

Glu

-0.325

0.025

-0.105

-0.101

-0.177

-0.225

-0.194

-0.191

0.018

Gly

-0.321

0.054

0.009

0.022

0.001

-0.144

-0.046

-0.007

0.110

His

-0.070

0.157

0.053

0.055

-0.013

0.030

0.015

-0.069

0.012

Ile

-0.102

0.101

0.039

0.048

-0.016

-0.027

0.096

-0.048

0.069

Leu

-0.084

0.085

0.079

0.157

-0.014

-0.023

0.157

-0.031

0.073

Lys

-0.183

0.009

0.040

0.445

0.241

-0.032

0.430

-0.108

0.278

Met

-0.131

0.073

0.020

0.055

-0.056

-0.032

0.046

-0.091

0.236

Phe

0.157

0.111

0.122

0.118

0.012

0.157

0.082

0.002

-10.000

Pro

-0.555

-0.397

0.169

-0.470

0.157

-10.000

-10.000

0.157

-10.000

Ser

-0.321

0.040

0.009

-0.028

-0.070

-0.147

-0.083

-0.084

0.157

Thr

-0.251

0.083

0.068

-0.017

-0.058

-0.130

-0.019

-0.074

0.206

Trp

0.090

0.192

0.151

0.130

0.033

-0.191

0.203

-0.045

-10.000

Tyr

0.054

0.083

0.157

0.139

-0.021

0.103

0.086

-0.124

-10.000

Val

-0.140

0.110

0.108

0.051

-0.005

-0.056

0.025

-0.012

0.137


Binding scores are normalized over all positions. Non-binding amino acids were assigned penalty score -10.000. Values above 0.100 are emboldened.

Patronov et al. BMC Structural Biology 2011 11:32   doi:10.1186/1472-6807-11-32

Open Data