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Open Access Highly Accessed Methodology article

Peptide binding prediction for the human class II MHC allele HLA-DP2: a molecular docking approach

Atanas Patronov12, Ivan Dimitrov2, Darren R Flower3 and Irini Doytchinova2*

Author Affiliations

1 Rebirth, Hannover Biomedical Research School, Carl-Neuberg st 1, 30625 Hannover, Germany

2 School of Pharmacy, Medical University of Sofia, 2 Dunav st., 1000 Sofia, Bulgaria

3 Life and Health Sciences, Aston University, Aston Triangle, Birmingham, B4 7ET, UK

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BMC Structural Biology 2011, 11:32  doi:10.1186/1472-6807-11-32

Published: 14 July 2011

Additional files

Additional file 1:

Test set of known HLA-DP2 binders. The file contains a test set of 457 known peptide binders to HLA-DP2, parent protein NCBI GI numbers and IC50 values.

Format: XLS Size: 47KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional file 2:

DS-QMnpp for HLA-DP2 binding prediction of 13 mer peptides. The file contains the DS-QMnpp for HLA-DP2 binding prediction of 13 mer peptides. Binding scores are normalized position per position. Non-binding amino acids were assigned a binding score of -10.000.

Format: DOC Size: 158KB Download file

This file can be viewed with: Microsoft Word Viewer

Open Data