Table 1

Protein sets of Thermophilic and Mesophilic endoglucanases

(α/β)8 fold

β-jelly roll fold

(α/α)6 fold


GH5 and GH44 families

GH7 and GH12 families

GH8, GH48, and GH9 families


Organism

PDB id

Length

Organism

PDB id

Length

Organism

PDB id

Length


Pyrococcus horikoshii

2zum

458

Humicola insolens

1ojj

402

Clostridium thermocellum NCIB

1kwf

363


Acidothermus cellulolyticus

1ece

358

Humicola grisea

1olr

224

Clostridium thermocellum

1clc

639


Thermophilic Endoglucanases

Clostridium cellulolyticum

1edg

380

Rhodotermus marinus

2bw8

227

Acyclobacillus acidocaldarius

3gzk

537


Clostridium thermocellum

1cec

343

Fusarium oxysporum

3ovw

411

Clostridium thermocellum F7

1l1y

678


Bacillus sp.kas-635

1g0c

364

Thermobifida fusca

1tf4

605


Thermoascus auranticus

1h1n

305


Uncultured bacterium

3ii1

535


Clostridium thermocellum

2e4t

509


Prevotella bryantii

3l55

353

Streptomyces lividans

2nlr

234

Gluconacebacter xylinus

1wzz

334


Mesophilic Endoglucanases

Bacillus agaradhaerens

7a3h

303

Hypocrea jecorina

1oa2

218

Nasutitermes takasagoensis

1ks8

433


Erwinia chrysanthemi

1egz

291

Bacillus licheniformis

2jen

261

Clostridium cellulolyticum

1g87

614


Clostridium acetobutylicum

3ik2

512

Aspergillus niger

1ks5

223

Clostridium cellulolyticum

1ia6

441


Clostridium cellulolyticum

1g9g

629


A subset of proteins with less than or equal to 70% sequence identity was created as described in the Methods section. A protein is considered thermophilic if the source organism's optimum growth temperature is above 40°C. GH stands for glycosyl hydrolase.

Yennamalli et al. BMC Structural Biology 2011 11:10   doi:10.1186/1472-6807-11-10

Open Data