Table 3

ANNOTATION (GENE ONTOLOGY) OF SSH-ISOLATED TRANSCRIPT FROM MOUSE URINARY BLADDER

Biological Process

Abbrev

Molecular Function

Cellular Component

Accession


actin dynamics

Wdr1

actin binding

actin cytoskeleton

NM_011715

apoptosis

Sirt1

NAD-dependent histone deacetylase

chromatin silencing complex

AF214646

apoptosis

Bcap31

receptor binding

Golgi membrane

NM_012060

apoptosis

Siva

CD27 receptor binding

cytoplasm

NM_013929

calcium ion binding

SCP-1

calcium ion binding

integral to membrane

D16847

calcium ion binding

Sparc

calcium ion binding

basement membrane

NM_009242

calcium ion binding

Smoc2

calcium ion binding

extracellular space

NM_022315

calcium ion binding

Pls3

calcium ion binding

unknown

NM_145629

calcium ion binding

SC1

calcium ion binding

extracellular space

U77330

cell adhesion

Col3a1

extracellular matrix structural constituent

collagen

AK019448

cell adhesion

Catenin

protein binding

cytoskeleton

BC043108

cell cycle/G-protein coupled receptor

Calm2

protein binding

plasma membrane

NM_007589

cell growth (regulation)

Prss11

insulin-like growth factor binding

extracellular region

NM_019564

cell motility

Actr3

structural molecule

actin cytoskeleton

NM_023735

cytoskeleton organization and biogenesis

Actg1

motor activity

actin cytoskeleton

NM_009609

cytoskeleton organization and biogenesis

Actg2

motor activity

actin cytoskeleton

NM_009610

cytoskeleton organization and biogenesis

My lc2b

unknown

cytoskeleton

NM_023402

defense response

Ly6d

unknown

plasma membrane

X63782

electron transport

Grp58

electron transporter

endoplasmic reticulum

BC003285

electron transport

Cox7b

oxidoreductase activity

mitochondrial electron transport chain

NM_025379

electron transport

CoxI

ubiquinol-cytochrome-c reductase activity

mitochondrion

X57780

epithelial cell proliferation

Grn

phospholipase A2

mitochondrion

X62321

immune response

IFIT3

unknown

unknown

BC003804

insulin processing

Cpe

carboxypeptidase A and E activity

extracellular space

NM_013494

iron ion transport

Fth1

ferric iron binding

unknown

NM_010239

metabolism

Gst a4

glutathione transferase

unknown

NM_010357

metabolism

Gst m1

glutathione transferase

unknown

NM_010358

metabolism

Gst o1

glutathione transferase

cytoplasm

NM_010362

negative regulation of translational initiation

Eif4ebp2

insulin receptor signaling pathway

unknown

NM_010124

nuclear mRNA splicing, via spliceosome

Sf sc35

DNA binding

spliceosome complex

AF077858

nuclear mRNA splicing, via spliceosome

Sf 3b2

unknown

nucleus

BC049118

nuclear mRNA splicing, via spliceosome

Sf rs6

pre-mRNA splicing factor

nucleus

NM_026499

phospholipid biosynthesis

Gpam

acyltransferase

mitochondrion

NM_008149

positive regulation of transcription

Mafb

DNA binding

transcription factor complex

AF180338

post-embryonic development

Sepp1

selenium binding

extracellular space

NM_009155

protein biosynthesis

RPs21

structural constituent of ribosome

ribosome

BC027563

protein biosynthesis

RPs7

RNA binding

ribosome

NM_011300

protein folding

DnaJ

unfolded protein binding

membrane

NM_019794

protein ubiquitination

Zfp364

ubiquitin-protein ligase activity

ubiquitin ligase complex

NM_026406

proteolysis and peptidolysis

Cts e

neutrophil collagenase activity

extracellular space

NM_007799

proteolysis and peptidolysis

Cts h

cysteine-type endopeptidase activity

lysosome

NM_007801

proteolysis and peptidolysis

Cts l

cysteine-type endopeptidase activity

lysosome

NM_009984

proteolysis and peptidolysis

TMPRSS2

trypsin activity

integral to membrane

NM_015775

regulation of cell shape

Sprr 2A

constituent of cytoskeleton

cornified envelope

BC010818

regulation of muscle contraction

Cnn1

calmodulin binding

unknown

NM_009922

regulation of muscle contraction

Myl19

calcium ion binding

myosin

XM_283793

response to oxidative stress

Prdx1

antioxidant activity

unknown

NM_011034

response to oxidative stress

Prnp

copper ion binding

Golgi apparatus

NM_011170

synaptic transmission

Syn1

protein dimerization

synaptic vesicle membrane

NM_013680

tRNA aminoacylation

Lamp2

tRNA ligase

platelet dense granule membrane

NM_010685

unknown

RPCI23

unknown

unknown

AC078911

unknown

Mgs1-182e11

unknown

unknown

AC096622

unknown

RP23-70M6

unknown

unknown

AC114820

unknown

Tcra-V13.1

unknown

unknown

AE008684

unknown

Upk1a

unknown

integral to membrane

AF262335

unknown

SAC1

unknown

integral to membrane

AJ245720

unknown

Elp3

N-acetyltransferase activity

mitochondrion

AK012072

unknown

Ambladder

unknown

unknown

AK020558

unknown

MLZE

unknown

unknown

AK037079

unknown

Amcq

unknown

unknown

AK080832

unknown

RP23-452N23

unknown

unknown

AL928645

unknown

Endomuc1

unknown

integral to membrane

BC003706

unknown

UDP-gluco

unknown

unknown

BC019434

unknown

Sdfr1

receptor activity

integral to membrane

NM_009145

unknown

Serpina3n

endopeptidase inhibitor

extracellular space

NM_009252

unknown

Ddx3

ATP-dependent helicase activity

intracellular

NM_010028

unknown

Gus

unknown

unknown

NM_010368

unknown

Tnnt3

unknown

unknown

NM_011620

unknown

Ifrg15

unknown

unknown

NM_022329

unknown

2310015N07

unknown

unknown

NM_025515

unknown

Thsd6

unknown

extracellular space

NM_025629

unknown

Upk1b

unknown

integral to membrane

NM_178924

unknown

Aplp2

serine-type endopeptidase inhibitor activity

integral to membrane

U15571

unknown

Mpp1

protein binding

membrane

U38196

unknown

My h11

unknown

unknown

XM_147228

unknown

Lrrfip2

unknown

unknown

XM_284541


Saban et al. BMC Physiology 2006 6:1   doi:10.1186/1472-6793-6-1

Open Data