Table 4

Position, polymorphism, and recurrence of mutations in the fisher mitochondrial genome.

Genomic position

423

1985

4144

5492

5768

6515

8131

8524

9166

11705

11840

12799

13722

15349

15534

15569

15576

15647

15989


Locus

12s rRNA

16s rRNA

ND2

COX1

COX1

COX1

ATP6

ATP6

COX3

tRNA LeuCUN

ND5

ND5

ND6

tRNA Thr

D-loop

D-loop

D-loop

D-loop

D-loop

Locus position

354

891

238

156

432

1179

195

588

550

21

95

1054

371

44

96

131

138

208

550

Nucleotide

A/G

A/G

C/T

A/G

C/T

C/T

A/G

C/T

A/G

A/G

A/G

A/G

A/G

C/T

C/T

A/G

A/G

A/G

C/T

Amino Acid

-

-

Leu > Leu

Gln > Gln

Asp > Asp

Phe > Phe

Gly > Gly

Leu > Leu

Ala > Thr

-

Asn > Ser

Ser > Gly

Ala > Val

-

-

-

-

-

-

Changes

1

1

1

1

1

1

1

1

2

1

1

1

1

2

1

2

1

1

1

Consistency index

1

1

1

1

1

1

1

1

0.5

1

1

1

1

0.5

1

0.5

1

1

1

Homoplasy index

0

0

0

0

0

0

0

0

0.5

0

0

0

0

0.5

0

0.5

0

0

0

Retention index

1

1

1

1

1

1

1

1

0.6667

1

1

1

1

0.833

1

0

1

1

1

Rescaled ci

1

1

1

1

1

1

1

1

0.3333

1

1

1

1

0.417

1

0

1

1

1


Genomic position is measured relative to the 5' end of tRNA-Phe. Locus position is relative to the first nucleotide of the start codon for coding sequences. Locus position for transfer RNAs are relative to the beginning of their 5' end. The location of the D-loop is relative to the end of tRNA-Pro, and substitutions occurring in the D-loop are indicated by bold type. Positions showing evidence of recurrent mutation are highlighted in bold print.

Knaus et al. BMC Ecology 2011 11:10   doi:10.1186/1472-6785-11-10

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