Table 2

Site
Compatible

BamHI
BglII/BclI
PvuII
Any Blunt
EcoRI
MfeI
XhoI
SalI/PspXI
AvaIII
PstI/Sse8387I
ClaI
AsuII/AccI (*)/AclI/AcyI/NarI
AgeI
Cfr9I (SmaI**)/BspMII/BetI/Cfr10I/NgoAIV (NaeI**)/SgrAI
NotI
Bsp120I (ApaI**)/CfrI/XmaIII
SacII

SplI
Asp718I (KpnI**)/Bsp1407I/TatI
StuI
Any Blunt
SphI
NspI
BspMII
Cfr9I (SmaI**)/AgeI/BetI/Cfr10I/NgoAIV (NaeI**)/SgrAI
Sse8387I
PstI/AvaIII
AsuII
ClaI/AccI (*)/AclI/AcyI/NarI
SalI
XhoI/PspXI
AccI
ClaI/AsuII/AclI/AcyI/NarI
HinDII
Any Blunt
BglII
BamHI/BclI
MfeI
EcoRI

Polylinker structure.

Sites present in the polylinker, 5' to 3', are indicated in bold type. Compatible sites are shown on the right.

*: only when "MK" from AccI GTMKAC site is CG (K = G or T, M = A or C).

**: prototype site with distinct cleavage structure.

Martin et al. BMC Biotechnology 2006 6:4   doi:10.1186/1472-6750-6-4