Table 1

Genotype concordance and failure rates for MDA compared with gDNA across genotyping platforms.

Genotype Concordance Rate (%)

Genotype Failure Rate (%)


Genotyping Platform

Site of MDA production

Number of SNPs

Number of non-excluded samples

gDNA and MDA product template

gDNA template

MDA product template


TaqMan

MSI

95

88

99.71

2.4

4.0

TaqMan

In-house

2

448

99.4

0.7

1.9

BeadArray

MSI

345

77

98.8

0.06

0.2

Invader

MSI

13

88

99.9

0.9

2.6


Pask et al. BMC Biotechnology 2004 4:15   doi:10.1186/1472-6750-4-15

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