Table 2

1 SNP or 2-SNP subsets with the highest group accuracies using LDA and sIB for predicting psoriasis

Subsets

Components

Test accuracy among controls with ≥0.4 among cases(Bootstrap mean and 95% CI)

Components

Test accuracy among cases with ≥0.4 among controls(Bootstrap mean and 95% CI)


LDA


1 SNP

rs7507133 on 19

0.582(0.586, 0.555-0.613)

rs231390 on 2

0.607(0.591, 0.558-0.628)

2 SNPs,based on all combinations

___*

___*

____ Δ

____ Δ

sIB

1 SNP

rs12191877 on 6

0.761(0.760, 0.735-0.785)

rs7773175 on 6

0.731(0.731, 0.694-0.764)

2 SNPs-based on all combinations

rs12191877 on 6 rs3823418 on 6

0.850(0.850, 0.826-0.870)

rs1265078 on 6 rs1466215 on 4

0.749(0.748, 0.718-0.779)


* No subsets with test accuracies ≥0.4 among cases

ΔNo subsets with test accuracies ≥0.4 among controls

Fang et al. BMC Dermatology 2011 11:1   doi:10.1186/1471-5945-11-1

Open Data