|
Primers and PCR conditions used in BACH1 mutation analysis. |
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| Exon |
Strand |
Primer name |
Nucleotide sequence (5'→3') |
Amplicon lenght (bp) |
Annealing temperature (°C) |
|
|
|||||
| 2 |
Forward |
Ex2F |
CTGTTTCCAGATTTCTCCC |
||
| Reverse |
Ex2R |
GTGAACCCAGAAAATATTCTCC |
331 |
58 |
|
| 3 |
Forward |
Ex3F |
CCCTGGAGTGCAATCTCACT |
||
| Reverse |
Ex3RN |
TAGCGACAGCATGGCTGAA |
319 |
48 |
|
| 4 |
Forward |
Ex4F |
CCTGGGTGAACTGGGCTGTAG |
||
| Reverse |
Ex4RN |
TAACAGTAATAATTAAGACTC |
316 |
48 |
|
| 5 |
Forward |
Ex5FN |
TTGCCTACCTGTAAGTTATTTATG |
||
| Reverse |
Ex5RN |
ACCATGTTCAGCTGTAACTAACTG |
233 |
60 |
|
| 6 |
Forward |
Ex6F |
GAGCTGTTTTGGCCTTTGAGA |
||
| Reverse |
Ex6RN |
CTGAGTGGGTTGCTACTGTCCT |
317 |
55 |
|
| 7 |
Forward |
Ex7F |
GTTCTGATTCCATGTGAGGTT |
||
| Reverse |
Ex7R |
GTACATATAAAACACATACTGAGT |
448 |
55 |
|
| 8 |
Forward |
Ex8F |
GATGTTCCTCAAATTCTGAGATAA |
||
| Reverse |
Ex8R |
CATCTAAAAGCTTTTACATTCAAC |
386 |
55 |
|
| 9 |
Forward |
Ex9F |
GCCTATAGTGTGAATTTTAAAATG |
||
| Reverse |
Ex9R |
CCTAGTTAACCAAAGTTTACTAAC |
395 |
55 |
|
| 10 |
Forward |
Ex10F |
GATCAACGCATGACAATAATGATG |
||
| Reverse |
Ex10R |
GGGTTACTCACTAGATTTAATCTG |
320 |
55 |
|
| 11 |
Forward |
Ex11F |
GCATGTTTTGTTGGGTTTCATTGT |
||
| Reverse |
Ex11R |
GGTATGTATTAAACACATGCTAGC |
326 |
55 |
|
| 12 |
Forward |
Ex12F |
GTACCAGCTCTTTCAAATGAG |
||
| Reverse |
Ex12R |
CTATCTTTAAAAGAGTCAACCAC |
360 |
55 |
|
| 13 |
Forward |
Ex13FN |
GTGCTGGGATTACAGGTGTGAGCCA |
||
| Reverse |
Ex13RN |
ACTTGCTGGCACTTCAGGTATCTTC |
317 |
60 |
|
| 14 |
Forward |
Ex14F |
CTTGTTGCTTGATCTTTTATGTAC |
||
| Reverse |
Ex14R |
CTAGGAAGCTTACTGTGGTAA |
356 |
55 |
|
| 15 |
Forward |
Ex15FN |
ACAGCTCTATGAGATATATTG |
||
| Reverse |
Ex15RN |
TCATAGGAGAACAAGTACAAT |
504 |
55 |
|
| 16 |
Forward |
Ex16FN |
TTACTTAAAGACATTGAACTT |
||
| Reverse |
Ex16RNN |
CACTATAAAAGCAAAGCGC |
392 |
54 |
|
| 17 |
Forward |
Ex17FN |
CTGTTAGAAGTTAATATGATG |
||
| Reverse |
Ex17RN |
GAATACATACCAGTTCCTATG |
325 |
55 |
|
| 18 |
Forward |
Ex18F |
CCAATTTTCTGTCTGTCCCAC |
||
| Reverse |
Ex18R |
GATAGTAGAGCTCATGTTATGTG |
254 |
55 |
|
| 19 |
Forward |
Ex19F |
CTTCACTAGAAAAAGCAAGTG |
||
| Reverse |
Ex19R |
CCACCATATTTAAGGAATTAATC |
523 |
48 |
|
| 20A |
Forward |
Ex20AFN |
ACCTAGCAATTATGTTAGCT |
||
| Reverse |
Ex20ARN |
TCTGTATCTTCAGGATCGTA |
584 |
48 |
|
| 20B |
Forward |
Ex20BFN |
ATTGATGCCACCCTTACTA |
||
| Reverse |
Ex20BRNN |
TAACATAAGCATGATGACATA |
565 |
54 |
|
Vahteristo et al. BMC Cancer 2006 6:19 doi:10.1186/1471-2407-6-19 |
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