Table 2

Infratentorial vs Supratentorial LGGs: selected genes by l1l2
Gene f.s. Gene f.s. Gene f.s. Gene f.s. Gene f.s.
ABBA1 100 KIAA2022 100 KIAA1189 98 RHOB 92 ZNF228 78
ADRBK2 100 NRGN 100 KLHDC8A 98 RORB 92 LTB4DH 75
ALK 100 PAX3 100 LRAP 98 SCG2 92 TMEPAI 75
AMMECR1 100 PCDH8 100 MAN2A1 98 SLC10A4 92 BMS1P5 72
ANKRD10 100 PCDHB16 100 NEFH 98 SNRPN 92 KIAA1967 72
APOD 100 PCNX 100 NHSL1 98 SOX4 92 KRAS 72
ARRB1 100 PDGFRA 100 NOS1 98 SPRN 92 MNDA 72
ARX 100 PKIB 100 NR4A1 98 TOB1 92 CUL4A 70
ATP6V0E1 100 PPM1E 100 PLK2 98 AKAP11 90 NRXN2 70
ATXN3 100 PPP1R9A 100 POLR2J2 98 FCF1 90 VSNL1 70
BICD1 100 PRO1073 100 POSTN 98 GFAP 90
RBM15 100 RARRES1 100 PSD3 98 GPR98 90
C1QL1 100 RASGRP1 100 RPS11 98 MAP4K4 90
CAPN3 100 RCOR1 100 SPAG9 98 RAB27B 90
CCDC76 100 RGS4 100 SPATA18 98 SHC4 90
CD24 100 RRM2 100 SPOCK1 98 VAMP1 90
CHAD 100 SDC3 100 STON2 98 CRYAB 88
CNIH3 100 SHROOM3 100 TMEM158 98 DOCK9 88
COCH 100 SLC35A3 100 TSPAN5 98 FAM149A 88
COG5 100 SMA4 100 ZC3H7A 98 FNDC3B 88
CREB5 100 SMOC1 100 ADARB1 95 FOSB 88
CTGLF1 100 SNX21 100 CAMK2N1 95 N4BP2 88
CX3CR1 100 SOX10 100 CAMKK2 95 NUCKS1 88
CXCL14 100 STMN2 100 CDC2L5 95 RPL37A 88
CYR61 100 STXBP6 100 COL22A1 95 SST 88
ENC1 100 SUSD5 100 GLTSCR2 95 ZNF226 88
EPHX1 100 TIMP4 100 GPNMB 95 GRM3 85
F2RL1 100 TMTC4 100 GRIA4 95 KIAA1919 85
FBXL3 100 TNFAIP6 100 LRRFIP1 95 PGM2L1 85
FNDC1 100 TRPM3 100 LYZ 95 PTPRC 85
FOS 100 U2AF1 100 NANOG 95 CCL4 82
FOXG1 100 ZFHX4 100 OLFM2 95 CUL2 82
FZD7 100 ZFP36 100 OPA1 95 FBXL11 82
GADD45B 100 ZNF207 100 PHCA 95 GARNL4 82
GNL3L 100 ZNF294 100 PKP4 95 LCMT2 82
GUCY1A3 100 ADRB1 98 PLEKHA2 95 TMEM132E 82
HINT3 100 ALDOC 98 PMP2 95 TYMS 82
HS3ST3B1 100 ANKRD22 98 PPP2R5C 95 GGNBP2 80
ID4 100 ATM 98 WIF1 95 IL8 80
IRX2 100 CCDC91 98 ASCL1 92 PLA2G2A 80
KIAA0101 100 CLEC4A 98 AZGP1 92 PMS2L5 80
KRIT1 100 COL9A2 98 F11R 92 S100A1 80
LHX2 100 ENPP2 98 FZD8 92 SEZ6L 80
MBP 100 FAM107B 98 LCAT 92 ZNF423 80
MICAL2 100 FAM89A 98 LMO2 92 EPHA5 78
NAIP 100 FRMD4A 98 MIAT 92 GPBP1L1 78
NCOA3 100 GALNT13 98 NEFM 92 MCTP1 78
NEFL 100 GAS7 98 PPP1CB 92 PTPN5 78
NR2E1 100 GPR17 98 PTGD2S 92 STMN4 78

List of 206 gene symbols selected by the l1l2 procedure. For each Gene ID we report the highest frequency score. We share 14 genes, showed in bold, with the results reported by previous studies [9,19,20].

Mascelli et al.

Mascelli et al. BMC Cancer 2013 13:387   doi:10.1186/1471-2407-13-387

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