Table 3

Copy number variants (CNVs) that were detected in primary, metastatic and recurrent tumors
Region Type CNV segements indicating deletion/amplification
OV OMN REC
Coordinates Mean log ratio Coordinates Mean log ratio Coordinates Mean log ratio
1p35-1p36 Del 861393-12980233 −0.3979 861322-27589726 −0.5557 861322-27589726 −0.5263
13910301-22895846 −0.391 28059114-29652173 −0.5209 28059114-29650008 −0.5321
Chr4 Del 264888-42088143 −0.1326 264888-1389640 −0.5261 264888-1389640 −0.5903
42145445-88235112 −0.1643 20255439-145040934 −0.5052 18023221-141832508 −0.5217
88258428-190874280 −0.1689 148785997-189026086 −0.5084 147227078-190873442 −0.5302
6q16-6q25 Del 153313992-170176161 −0.2665 96971022-170893669 −0.5104 96969750-170893669 −0.5462
8p21-8p23 Del 117024-28385681 −0.287 190896-28385681 −0.5488 190896-28385681 −0.5817
8q21-8q24 Amp 90775210-122641580 0.5658 90926305-95709154 0.5043 91836945-97172920 0.5658
123963751-142226069 0.98 97605708-122641580 0.927 97243283-121357802 0.9853
142227189-145278133 0.5909 123963751-145725582 1.3829 121379410-145622144 1.4429
145515440-146279543 0.5688
11q12-11q14 Amp 64676463p-134251918 0.1758 63581159-94354158 0.7324 63766427-94354158 0.7829
12p12-12p13 Amp 250451-6637339 0.1653 247439-22089608 0.4673 247439-22089608 0.4963
6638679-9262631 0.188
9264755-13140266 0.3317
13208485-31107009 0.2592
12q21-12q24 Del 31116761-121883221 −0.1361 65078567-113909303 −0.5148 64668681-133781116 −0.5465
121970711-131616361 −0.3135 114282473-133781116 −0.55
132195775-133781116 −0.3871
16q21-16q24 Del 3725325-90142318* −0.2189 50102691-90030718 −0.5425 50069328-69988476 −0.563
70428885-90142318 −0.5792
17p + 17q11-17q21 Del 171206-7755654 −0.3947 63643-36881851 −0.5335 63643-36709091 −0.5552
7758393-18286499 −0.3397 36894606-41234592 −0.5191 36865426-41256973 −0.546
18539775-42328956 −0.3036
19p13.3 Del 374421-8429523 −0.448 474621-8194249 −0.5189 110679-8402712 −0.5409
19p13.2 Amp 8555110-11531615 0.1418 8429206-18541740 0.4018 8429206-10625687 0.4414
11559037-16639066 0.1043 10677734-11031424 0.8088
11031510-18548570 0.4299
19q13.2-19q13.4 Del 17317922-59082756 −0.2849 41626252-59082756 −0.5468 41306478-59082756 −0.5686
22q Del 17073440-18909917 −0.362 16448824-51133476 −0.517 17071767-51065188 −0.5632
19029320-42999166 −0.3716
43023310-51065480 −0.4172

OV= primary tumor; OMN=metastatic tumor; REC=recurrent tumor after chemotherapy.

Zhang et al.

Zhang et al. BMC Cancer 2013 13:146   doi:10.1186/1471-2407-13-146

Open Data