|
Association of single markers in LSAMP gene with completed suicide. |
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| Name |
Pos 5' |
Area |
Alleles (major/minor) |
MAF* case |
MAF* control |
Chi square |
P value** |
HWE p value |
|
|
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| rs16824996 |
-23333 |
5' flanking region |
T/C |
0.86 |
0.86 |
0.06 |
0.814 |
1.000 |
| rs6787168 |
-20108 |
5' flanking region |
T/C |
0.72 |
0.7 |
1.06 |
0.303 |
0.443 |
| rs4831140 |
-8362 |
5' flanking region |
A/T |
0.83 |
0.81 |
0.83 |
0.363 |
0.766 |
| rs4831097 |
14146 |
intron 1 |
C/T |
0.89 |
0.88 |
1.03 |
0.309 |
0.927 |
| rs9289051 |
46772 |
intron 1 |
G/T |
0.9 |
0.87 |
3.63 |
0.057 |
1.000 |
| rs17647013 |
65337 |
intron 1 |
C/T |
0.9 |
0.9 |
0.05 |
0.825 |
0.487 |
| rs988803 |
78700 |
intron 1 |
T/A |
0.8 |
0.79 |
0.47 |
0.494 |
0.200 |
| rs7634137 |
94215 |
intron 1 |
T/C |
0.83 |
0.8 |
1.19 |
0.276 |
0.165 |
| rs1920191 |
121973 |
intron 1 |
G/A |
0.75 |
0.73 |
0.58 |
0.446 |
0.260 |
| rs2100807 |
140388 |
intron 1 |
A/G |
0.84 |
0.82 |
0.84 |
0.361 |
0.601 |
| rs1461131 |
163706 |
intron 1 |
G/A |
0.61 |
0.63 |
0.38 |
0.538 |
0.939 |
| rs16824691 |
181606 |
intron 1 |
T/A |
0.8 |
0.78 |
0.59 |
0.442 |
0.027 |
| rs4831129 |
182935 |
intron 1 |
T/G |
0.74 |
0.68 |
4.19 |
0.041 |
0.180 |
| rs4831089 |
192350 |
intron 1 |
G/A |
0.61 |
0.64 |
1.24 |
0.266 |
0.774 |
| rs9874470 |
198730 |
intron 1 |
T/C |
0.74 |
0.68 |
4.13 |
0.042 |
0.078 |
| rs6438308 |
209904 |
intron 1 |
G/C |
0.81 |
0.78 |
1.45 |
0.228 |
0.036 |
| rs4831124 |
218505 |
intron 1 |
T/C |
0.66 |
0.63 |
1.59 |
0.208 |
0.551 |
| rs2944425 |
565336 |
intron 3 |
C/T |
0.61 |
0.57 |
1.66 |
0.197 |
0.997 |
| rs9830559 |
568061 |
intron 3 |
T/C |
0.6 |
0.62 |
0.76 |
0.384 |
0.578 |
| rs1464140 |
569000 |
intron 3 |
T/C |
0.82 |
0.81 |
0.05 |
0.821 |
0.845 |
| rs10511350 |
573847 |
intron 3 |
G/C |
0.91 |
0.9 |
0.49 |
0.485 |
0.757 |
| rs6763835 |
590546 |
intron 4 |
C/T |
0.64 |
0.61 |
0.9 |
0.344 |
0.652 |
| rs4416377 |
599008 |
intron 4 |
T/C |
0.79 |
0.78 |
0.6 |
0.437 |
0.010 |
| rs2918213 |
611939 |
intron 6 |
C/T |
0.68 |
0.63 |
3.98 |
0.046 |
0.287 |
| rs2918215 |
616902 |
intron 6 |
G/A |
0.93 |
0.89 |
4.1 |
0.043 |
0.385 |
| rs2918217 |
617998 |
intron 6 |
G/A |
0.87 |
0.86 |
0.33 |
0.565 |
0.423 |
| rs9822311 |
625727 |
intron 6 |
G/C |
0.71 |
0.68 |
1.06 |
0.303 |
0.020 |
| rs2289271 |
635618 |
3' flanking region |
G/A |
0.59 |
0.54 |
3.21 |
0.073 |
0.801 |
| rs2918239 |
682816 |
3' flanking region |
T/G |
0.85 |
0.84 |
0.46 |
0.498 |
0.787 |
| rs2918206 |
715846 |
3' flanking region |
C/T |
0.59 |
0.56 |
1.16 |
0.282 |
0.054 |
|
* MAF = major allele frequency ** not corrected for multiple testing | ||||||||
Must et al. BMC Medical Genetics 2008 9:34 doi:10.1186/1471-2350-9-34 |
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