Table 5

Haplotype frequency and test statistics between cases and controls using htSNPs.

Haplotypes from htSNPsa

Represented haplotypes from 10 SNPsa

Patient (frequency)

Normal

Fisher's Exact Test (P value)b

ORa,c

95% CIc


TAG

TAGTAAGACA

TAGTAAGATA

0.365

0.369

1.000

0.983

0.66–1.47

TGC

TAGAGACCTG

TAGTGACCTG

TAGTGACATG

0.185

0.169

0.699

1.109

0.66–1.85

GGC

GGTTGCCCTA

GGGAGACCCA

GGTTGCCCTG

GGTAGACCCA

0.155

0.102

0.137

1.616

0.89–2.92

TAC

TAGTAACACA

TAGTAACCTG

0.030

0.039

0.787

0.765

0.26–2.25

TGG

TAGCGCGACA

0.025

0.015

0.498

1.735

0.41–7.36

Others

0.240

0.306

0.149

0.717

0.46–1.11

Total

0.446


a. SNPs in bold and dark color are htSNPs selected from common haplotypes using the SNPtagger program.

b. Chi-square, Fisher's Exact Test and Odds Ratio were calculated by using the SAS program.

c. OR: odds Ratio; CI: confidence Interval.

Lai et al. BMC Medical Genetics 2005 6:14   doi:10.1186/1471-2350-6-14

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