Table 6

PRDX6 SNPs thought to be miRNA target sites

SNP ID

Chromosome Position

Base Change

Ancestral

Derived

miRNA


rs4611

171723640

T/C

TTGGTGCT

CTGGTGCT


rs15268

171723695

C/A

AGCAATTA

hsa-miR-302f

ATTACATA

hsa-miR-380


rs3211528

171724201

G/A

CTGGGGGA

hsa-miR-361-3p


rs36005931

171724224

A/G

GTGCCTTC

TGTGCCTT


rs35820016

171724277

T/A

TTTTGCTA

hsa-miR-548p

TTGCAATA


rs1804053

171724351

G/A

ATGTAGCA

hsa-miR-221

hsa-miR-222


rs11544001

171724433

A/G

GTGCATGA

TGCATGAA

TGTGCATG


rs2000

171724457

G/A

AGAGAAGA

hsa-miR-942


*miRNA target site modeling was performed using Patrocles.

Rushefski et al. BMC Medical Genetics 2011 12:77   doi:10.1186/1471-2350-12-77

Open Data