Table 2

Novel SNPs discovered via direct sequencing

Novel SNPs

Region

Chr. Position

SNP

5' Flanking Sequence

3' Flanking Sequence

MAF in EA

MAF in AA

ss# (dbSNP)


PRDX6_171709541

5' UTR

171709541

G/C

CTTCAAGGTTC

ACCCTTATAGC

0.04

0.02

ss217326279


PRDX6_171709910

5' UTR

171709910

G/T

ATGATCATTTTT

GAAATATACAG

0.00

0.10

ss217326288


PRDX6_171710327

5' UTR

171710327

C/T

ACCCTAGCCCC

TGTGCTGGCA

0.04

0.00

ss217326273


PRDX6_171710490

5' UTR

171710490

C/T

TGCACTGCGGA

GCAGGGACCT

0.00

0.06

ss217326283


PRDX6_171710775

5' UTR

171710775

G/C

CTTATGGCTGG

GTGAGACATG

0.00

0.02


PRDX6_171710821

5' UTR

171710821

C/T

ACTGCACTGAG

TTGTGTAAAGT

0.00

0.10

ss217326292


PRDX6_171711029

5' UTR

171711029

C/T

ACTCAGAGACC

GGGTCCTCCG

0.00

0.02


PRDX6_171712345

5' UTR

171712345

A/T

ATGGTTCATAA

AGAAAGGGGA

0.87

0.64

ss217326296


PRDX6_171713694

intron

171713694

G/T

TCACTTCCCCG

AGTGCCCAGG

0.00

0.04

ss217326300


PRDX6_171713738

intron

171713738

G/T

CCTCCGTTCTG

TGCTCCCTGG

0.00

0.02


PRDX6_171713872

intron

171713872

C/T

GCACAAAATGT

TAAAACCACTA

0.00

0.12

ss217326323


PRDX6_171713919

intron

171713919

G/C

AAAGACTTTTTG

AGCCGCCTCC

0.02

0.00


PRDX6_171714107

intron

171714107

C/T

CCAGGACACGT

TCCCCAACTTT

0.00

0.04

ss217326304


PRDX6_171714984

intron

171714984

C/T

GATCAAAAGTG

TTATCAGGGAG

0.04

0.04

ss217326307


PRDX6_171715019

intron

171715019

A/G

AGGAACACGGT

TATCTGCATTT

0.00

0.10

ss217326318


PRDX6_171715596

intron

171715596

A/G

GGGAGGGAAG

TGAACTGGCTT

0.00

0.02


PRDX6_171716007

intron

171716007

A/G

AAACCTTGGGA

GTGGCAGCCG

0.00

0.04

ss217326311


PRDX6_171716032

intron

171716032

G/C

TAAGTAGGAAG

TGCCCTTGTCT

0.00

0.02


PRDX6_171716554

intron

171716554

A/C

AGAAGCCAAGT

AACTTTAATTTT

0.00

0.02


PRDX6_171716572

intron

171716572

A/T

TCAACTTTAATT

TAAATAGAAGA

0.00

0.02


PRDX6_171716582

intron

171716582

A/G

TTACATATAAAT

ATAGAAACCTA

0.00

0.04

ss217326315


PRDX6_171716584

intron

171716584

A/T

ACATATAAATAG

AGAAACCTATT

0.00

0.02


PRDX6_171716603

intron

171716603

A/G

AACCTATTTATT

ATTACATAATTT

0.00

0.02


PRDX6_171723151

Intron

171723151

C/T

AAAGCTAGCAT

TGGAGAAGAA

0.00

0.02


PRDX6_171723403

Intron

171723403

C/T

CTTGATTAGTCT

AGCACCTGTAG

0.00

0.02


PRDX6_171723889

3'UTR

171723889

G/T

AAAACTCAAAT

GGATCTCTGCA

0.00

0.04


PRDX6_171723918

3'UTR

171723918

A/G

GCTTGTGACCA

GTCATATTTGT

0.00

0.02


PRDX6_171724000

3'UTR

171724000

G/C

TAACTGTCCTAT

TCCTCTCCTGT

0.00

0.04

ss217326227


PRDX6_171724128

3'UTR

171724128

G/T

TTTTTTTAATAT

TGATCACAGAA

0.00

0.04

ss217326232


PRDX6_171724182

3'UTR

171724182

A/G

CATATTCTTTTA

TCTTGATCACA

0.00

0.04

ss217326236


PRDX6_171724286

3'UTR

171724286

A/T

TTGCTATAAAAA

TTTGTGATAAG

0.00

0.02


PRDX6_171724949

3'UTR

171724949

C/T

ACTCTACTAATA

CAGGTTTAGAA

0.26

0.00

ss217326270


PRDX6_171725122

3'UTR

171725122

G/T

GGACCTGCTTC

TTGTAGTTTGC

0.00

0.04

ss217326239


PRDX6_171725183

3'UTR

171725183

C/T

GGGATCATCGC

GTCTCATAAGG

0.00

0.04

ss217326242


PRDX6_171725257

3'UTR

171725257

A/T

CCTCCCAAAGG

CATCCAAATAC

0.00

0.04

ss217326247


PRDX6_171725485

3'UTR

171725485

C/T

CCTGCCTCAGC

GAGCAGCTGG

0.00

0.06

ss217326250


PRDX6_171725681

3'UTR

171725681

G/T

ATATTTTTATTG

TAGAATAATGT

0.00

0.02


PRDX6_171725826

3'UTR

171725826

A/G

TCTGGGGAATG

TTTGAAAGAGA

0.04

0.00

ss217326254


PRDX6_171727146

3'UTR

171727146

G/C

CTGTGATTCCT

TTGTGGTCTTG

0.02

0.00


PRDX6_171727831

3'UTR

171727831

C/T

ATGCATGGGAT

ATTATCCTCTA

0.04

0.02

ss217326261


PRDX6_171728416

3'UTR

171728416

G/T

CCTCATTAGGG

CTCTTAGCCCT

0.04

0.02

ss217326266


PRDX6_171728455

3'UTR

171728455

G/C

AATCGGGAGGC

TGTTAACAGGT

0.00

0.04

ss217326257


PRDX6_171729049

3'UTR

171729049

C/T

GTTCTTAAACTA

AATAGCATGAG

0.00

0.02


Rushefski et al. BMC Medical Genetics 2011 12:77   doi:10.1186/1471-2350-12-77

Open Data