Table 2

Genotype characteristics of cases and controls.

SNP

Genotype

Cases N = 354

n (%)

Controls N = 364

n (%)

p-value


rs9939609

AA (c)

129 (42.7)

136 (38.9)

0.92

AT (h)

124 (41.1)

161 (46.1)

TT (r)

49 (16.2)

52 (14.8)


rs1477196

AA (c)

123 (39.5)

164 (45.8)

0.91

AG (h)

130 (41.8)

154 (43.0)

GG (r)

58 (18.6)

40 (11.2)


rs7206790

CC (c)

102 (32.4)

121 (33.8)

0.38

CG (h)

142 (45.1)

163 (45.5)

GG (r)

71 (22.5)

74 (20.7)


rs8047395

AA (c)

89 (28.8)

101 (28.5)

0.86

AG (h)

140 (45.3)

172 (48.5)

GG (r)

80 (25.9)

82 (23.1)


The p-value is for testing the deviation from Hardy-Weinberg equilibrium (HWE) among controls.

The notation c, h, and r represent common homozygote, heterozygote, and rare homozygote, respectively.

Kaklamani et al. BMC Medical Genetics 2011 12:52   doi:10.1186/1471-2350-12-52

Open Data