Table 3

CNVs of unknown significance in schizophrenia and epilepsy samples

NIMH ID

Sex

Chr.

Start

Size (bp)

Genes

Validation

DGV


142-1320-001

M

2p21

44531130

68210

Loss

SLC3A1, PREPL, C3orf34

Cus1

2 overlap

149-1129-001

F

2p16.1

56091146

13954

Gain

EFEMP1

Cus4

None

49-1020-001a

F

4q28.2

129774971

154534

Gain

PHF17, SCLT1

Cus4

Identical

53-10259

F

6p22.3

17465076

387198

Gain

4

Cus4

1 overlap

70-11763

F

6p22.3

22272906

148050

Loss

PRL

Cus4

1 overlap

144-1291-001

M

6q14.1

76607923

25447

Loss

MYO6, IMPG1

Cus1

None

54-10078

F

6q15

87456408

730692

Gain

9

Cus4

3 overlap

144-1096-001

M

7q11.22

71029067

240023

Gain

WBSCR17, CALN1

Cat

Identical

142-1006-001

F

7q31.32

122364506

676522

Gain

CADPS2, TAS2R16, SLC13A1

Cus4

5 overlap

149-1114-001

M

8q21

84569675

844484

Loss

RALYL

Cat

1 overlap

54-10151a

M

9p24.3

115980

471438

Loss

5

Cat

Common

141-0680-001

F

9p24.1

6451073

394797

Gain

UHRF2, GLDC, KDM4C

Cus4

4 overlap

142-1340-001

M

12p13.33

1949926

37541

Loss

CACNA2D4

Cus1

1 overlap

143-2467-001

M

12p13.33

1949882

34631

Loss

CACNA2D4

Cus1

1 overlap

146-2019-001

M

12p11.22

29009447

562052

Gain

FAR2, ERGIC2

Cat

1 overlap

142-1274-001

M

13q34

110957062

275718

Gain

COL4A2, RAB20

Cus4

1 overlap

140-2154-001

M

13q34

114476840

148441

Gain

FLJ44054, GAS6, FAM70B

Cus4

2 overlap

144-1307-001

M

15q11.2

22842143

244550

Gain

TUBGCP5, CYFIP1, NIPA2,NIPA1 b

MLPA

Common

147-2423-001

M

15q13.3

32296138

142658

Gain

CHRNA7 b

MLPA

Common

35-71412-02

M

15q13.3

32296138

164344

Gain

CHRNA7 b

MLPA

Common

42-1051-002

F

16p13.2

8969708

103443

Gain

USP7

Cat

1 overlap

143-2384-001

M

16p13.2

8581817

830333

Gain

9

Cat

1 overlap

147-2080-001

M

16p13.12

12771677

165576

Loss

CPPED1

Cat

2 overlap

54-10151a

M

17p13.3

2995336

422668

Gain

14

Cat

1 overlap

54-10151a

M

17p13.2

3743015

483613

Gain

8b

Cat

2 overlap

49-1020-001a

F

17p12

14111831

1330176

Gain

9

Cat

Identical

142-1278-001

M

17p12

14897946

148020

Loss

CDRT7

Cus4

Identical

144-1594-001

M

17p11.2

21311601

50888

Gain

KCNJ12b

Cus3

Identical

148-2171-001

M

17q11.2

28524944

21111

Gain

SLC6A4

Cus1

None

35-08447-02

M

18q11-q12

24744073

458607

Gain

CHST9

Cus4

None

30-11632

F

19p13.3

6427852

429890

Gain

14

Cus4

None

143-2526-001

M

19q13.42

54646013

1707820

Gain

87

Cat

7 overlap


Abbreviations: As in Table 1.

a denotes samples having more than one CNV.

b denotes cases which had a similar call to CNV found in controls.

Stewart et al. BMC Medical Genetics 2011 12:154   doi:10.1186/1471-2350-12-154

Open Data